Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq863563 147 3e-30 seq310436 120 4e-22 seq863562 91.5 2e-13 >seq863563 Length=2837 Score = 147 bits (162), Expect = 3e-30 Identities = 222/312 (71%), Gaps = 3/312 (1%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| || ||| | |||| || ||| | | ||| Sbjct 2369 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 2310 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||||||||| | ||| || |||||||| || |||||||| | |||| Sbjct 2309 TATTGATTATTTCAAACCCCACTTTTCCACCAAAGGTGCTTGGCTTCCAGTACTCAGGGG 2250 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||| || || |||| || ||||| || || ||||| || || | || | || Sbjct 2249 AGCATATTGTATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCGCCAATTTCTACCATTG 2190 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAACTCC 8917 | ||||| |||||||| || | |||||||| || ||||| || | |||| ||| Sbjct 2189 TTTCACCAAAGATGGCACCTGGTCTAGGCTTTTCTAC-AAGAAGGCCTGGATACAGTTCC 2131 Query 8918 ACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT- 8976 | ||| || |||||||||||||| | ||||| ||||| ||||| ||||||||||| Sbjct 2130 ATAGCATCTATGTCTCCGTAAAGCTCTTCTAGTTCAGCAGCCATTTCTTTTTCTCCTGTA 2071 Query 8977 TTTATTAATAAA 8988 |||||||| || Sbjct 2070 ATTATTAATGAA 2059 Score = 140 bits (154), Expect = 5e-28 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| || |||||||| || || || ||| ||| |||||||| || |||||| Sbjct 350 ATGAGTCTTGTAGTCTGAAATAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAAG 291 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 ||||| || |||||||||||||| || ||||| || || || |||||||| || || || Sbjct 290 ACATCACAGACTCTGTTGTGTTCTCTTAGCCATATCGTTGCATACATCATTAGGCCTGGG 231 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| |||||| |||| || || |||| | ||| | || || || | ||||| Sbjct 230 ACCAAGCCAAACACCTCCTGCCCAACAGAAAACTGCAGGTGCTCAGGAACGTGAGGAGGG 171 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | | || || || || | || ||||||||||| || ||||| ||| Sbjct 170 TAGATCATCTCTGCTTGAGTGTCCTTTACTGTTGGTGGATACATTTCTCCATCAATCATC 111 Query 9862 TG 9863 || Sbjct 110 TG 109 >seq310436 Length=623 Score = 120 bits (132), Expect = 4e-22 Identities = 188/269 (70%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 8672 GGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATA 8731 || || |||||||| | |||||||| || |||||| || || || || | Sbjct 532 GGCACACGGAACGCCACGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCTCCAGT 473 Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791 | ||| ||||||||||| | || || |||| || ||||| ||||| |||||||| Sbjct 472 GATGCTGTCTTGACGATCTCGAAGCCGGTTGCTCCACCAAAGGTACTGGGCTTCCAGTAC 413 Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851 | |||||||||||| ||| | | || || || || ||||| ||||| || | ||| Sbjct 412 TCTGGGGAGCAGATGGGATTCCCAAGAAGTCCCTTCAGTGAAAATGGAGCGCCAATCTCC 353 Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911 | ||||| || || |||||| | ||||| |||| || || | || || || | || Sbjct 352 ACCATGCTTTCCCCAAAGATGCCATTGGGTTGGGGTTTCTCAAGCAGCAACCCTGGATAA 293 Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAG 8940 ||||||| ||| || |||||||| || || Sbjct 292 AACTCCAGAGCATCAATGTCTCCATACAG 264 >seq863562 Length=1711 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| || || | || |||||||| || || || || || || | |||| ||| Sbjct 164 ACCTTTAACACCCATCGGTGTTGGACAGTCATGTCCTACTGGTGGAAGGCTTCTTGTGTA 105 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 |||||| |||||||| ||||||||||| | ||| | ||||| |||||| | || Sbjct 104 ATAGGAAAGATTGGAATAAGCTTCCCAGGATTTGTAATTATAGTCACTGTTGTATGTTGG 45 Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAACAAGCAAAA 10448 |||||||||||||| | ||||| ||||| || |||| Sbjct 44 TGGGCTGTCAATCAAGTGTGATCTCGCTGAAAGAGAAAAA 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 699916241393120