Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq291425 104 2e-17 seq291424 98.7 8e-16 seq331414 91.5 1e-13 >seq291425 Length=203 Score = 104 bits (114), Expect = 2e-17 Identities = 106/136 (78%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||| ||||||||||| || || ||| ||||||||| |||||||| || | | Sbjct 191 CCTCCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 132 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || ||| |||| |||| |||||||| ||||| ||||| | ||||||||| || Sbjct 131 AGAGTG-CGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGG 73 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 72 AATGCCCTCCTTGTCC 57 >seq291424 Length=270 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| ||||| || ||||| || ||| ||||||||| |||||||| || | | Sbjct 234 CCTCCTCTCAGGCGCAGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 175 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || ||| |||| |||| |||||||| || || ||||| | ||||||||| || Sbjct 174 AGAGTG-CGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGG 116 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 115 AATGCCCTCCTTGTCC 100 >seq331414 Length=254 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || || |||||||||||||| || ||| ||||||||| |||||||| || | | Sbjct 170 CCACCCCTGAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 111 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| |||| |||| |||||||| || || ||||| | ||||||||| || Sbjct 110 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGA 51 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||||||||| Sbjct 50 ATGCCTTCTTTGTCC 36 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 392358709222396