Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq291424 116 4e-21 seq331414 102 8e-17 seq291425 87.8 2e-12 seq186997 82.4 8e-11 >seq291424 Length=270 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || | | |||||| ||||| Sbjct 219 AGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCGTCT 160 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || |||| |||||| ||||| ||||| || || || || Sbjct 159 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCC 100 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| ||| ||| | || |||| || ||||| || | || | ||| Sbjct 99 TGGA-TCTTGGCTTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCCAAGGTGATGGT 41 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| |||| || || ||||| || ||||| || Sbjct 40 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGTT 5 >seq331414 Length=254 Score = 102 bits (112), Expect = 8e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || || || || |||||||| || | | ||||||| ||||| Sbjct 155 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 96 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || |||| |||||| || |||||||| |||||||| || Sbjct 95 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCC 36 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCAC 64385 || || || ||| ||| ||| | || |||| Sbjct 35 TGGATCTTGGCCTTCACATTCTCAATGGTGTCAC 2 >seq291425 Length=203 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | | |||||| ||||| Sbjct 176 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCGTCT 117 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| |||||| ||||| ||||| || || || || Sbjct 116 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCC 57 Query 64352 TGTATTTT 64359 || || || Sbjct 56 TGGATCTT 49 >seq186997 Length=774 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 154631 CACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTT 154690 ||| ||||||| ||||| || |||||| ||||| |||| ||| | |||||| ||| Sbjct 455 CACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTGCTTTT 514 Query 154691 GATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTC 154735 ||||||| | ||||||||||| ||||| |||||||| || || Sbjct 515 CCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGGGTGCCAGTCTC 559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493574128171120