Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq863563 136 6e-27 seq310436 100 4e-16 seq863560 84.2 3e-11 >seq863563 Length=2837 Score = 136 bits (150), Expect = 6e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || || ||||| | |||||| ||| |||| || || || || ||||| | ||||| ||| Sbjct 341 GTAGTCTGAAATAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAAGACATCACAG 282 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 || |||||||||||||| |||||||| || || |||||||||| || || || || ||| Sbjct 281 ACTCTGTTGTGTTCTCTTAGCCATATCGTTGCATACATCATTAGGCCTGGGACCAAGCCA 222 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 ||||| || | ||| || | ||| |||| | || || || | || | || | ||| Sbjct 221 AACACCTCCTGCCCAACAGAAAACTGCAGGTGCTCAGGAACGTGAGGAGGGTAGATCATC 162 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | | || || || || || || || ||||||||||| || ||||| | ||| Sbjct 161 TCTGCTTGAGTGTCCTTTACTGTTGGTGGATACATTTCTCCATCAATCATCTG 109 Score = 114 bits (126), Expect = 2e-20 Identities = 203/296 (69%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||||||| || ||||| ||| | || || | Sbjct 2369 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 2310 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || |||||||| || ||||||||| | |||| Sbjct 2309 TATTGATTATTTCAAACCCCACTTTTCCACCAAAGGTGCTTGGCTTCCAGTACTCAGGGG 2250 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||| || || |||| || ||||||| || ||||| || || | || | || Sbjct 2249 AGCATATTGTATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCGCCAATTTCTACCATTG 2190 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || | || ||||| || | | ||| | || ||||| | Sbjct 2189 TTTCACCAAAGATGGCACCTGGTCTAGGCTTTTCTACAAGAAGGCCTGGATACAGTTCCA 2130 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| || || || |||| | || ||||| || || || || ||| Sbjct 2129 TAGCATCTATGTCTCCGTAAAGCTCTTCTAGTTCAGCAGCCATTTCTTTTTCTCCT 2074 Score = 107 bits (118), Expect = 3e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 ||||| |||||||| | ||| || | | || |||| | ||| | ||| ||||| Sbjct 1561 ATGGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCACGTATCTGAAAAGTG 1502 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| ||| | |||||| |||| || |||||||| || || || |||||||||||| Sbjct 1501 TCAGGCAGCAGTGGGTGCCAGTGGTACAGAGTATTGAATTCAGCTGCAATTCGGTTCTGG 1442 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | ||| || ||||| | || | ||||||||| | Sbjct 1441 TATTGAAAACGCTGGT--TGAACAGAAGCTCAGGATCAAACTTCAGTTTGAAGTGGTAGC 1384 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 | || | ||||| || || | | || | || || || ||||| || || Sbjct 1383 CACTCAAGTGCTGCACGTAATCTTCAATAACTATCTTGATCGTTTCTCCTGT 1332 >seq310436 Length=623 Score = 100 bits (110), Expect = 4e-16 Identities = 204/303 (67%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 8876 ACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTT 8935 || |||||||| | ||||||| |||||| ||| || | ||| || | | | Sbjct 529 ACACGGAACGCCACGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCTCCAGTGAT 470 Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || ||||| || || || | || || ||||| ||||| ||||||||| | Sbjct 469 GCTGTCTTGACGATCTCGAAGCCGGTTGCTCCACCAAAGGTACTGGGCTTCCAGTACTCT 410 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| ||| | | || || |||| ||||| ||||| || | ||| | Sbjct 409 GGGGAGCAGATGGGATTCCCAAGAAGTCCCTTCAGTGAAAATGGAGCGCCAATCTCCACC 350 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||||| || || |||||| || ||| | ||||| || | | || || | || | Sbjct 349 ATGCTTTCCCCAAAGATGCCATTGGGTTGGGGTTTCTCAAGCAGCAACCCTGGATAAAAC 290 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | ||| || | ||| ||||| || | |||| ||| || || ||| || ||| ||| Sbjct 289 TCCAGAGCATCAATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCTTCTTCTCCTCTCCT 230 Query 9176 ACA 9178 || Sbjct 229 GCA 227 >seq863560 Length=211 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| |||| ||||| ||||| | || |||| ||| || ||||| ||| || Sbjct 178 CTTACGTGTCGTACAGTTTTCCCCATAATAGCCTGTCCTCGTGCAGTCGCATTCATACCG 119 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 |||||| || ||||| || || |||| ||||| |||||| | || ||||||||||| Sbjct 118 ATCAAATCCTGTTGTCATACACACACCTCTGTTCTGACACGGGAGGGAGCAGCAAGGGTT 59 Query 10960 GGCTGCAAT 10968 ||||| ||| Sbjct 58 GGCTGGAAT 50 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714934722893200