Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq291424 141 9e-29 seq331414 111 2e-19 seq291425 109 5e-19 seq456222 84.2 2e-11 >seq291424 Length=270 Score = 141 bits (156), Expect = 9e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || || ||||| ||||||||| | || || || || Sbjct 5 AACATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTGGAACCC 64 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | |||| || |||| ||||| ||||| |||||| |||| Sbjct 65 AGTGACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGAT 124 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | ||| ||||| |||||||| |||| |||||| || |||||| Sbjct 125 CAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACTCTGTCTGACTAC 184 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||||| | || || ||| | || ||||| ||||||| ||| Sbjct 185 AACATCCAGAAGGAGTCCACTCTCCATCTTGTCCTGCGCCTGAGAGGAGGC 235 >seq331414 Length=254 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| |||||||| || ||||| | || || ||| |||| || | ||| ||||| Sbjct 28 AAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAGCAGAGGCTGATCTTCGCTGGCAAG 87 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| |||| ||||||||| |||||||||||||| ||||| | || |||||| Sbjct 88 CAGCTGGAAGACGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTGCAT 147 Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| | || || ||| Sbjct 148 CTGGTGCTGCGCCTCAGGGGTGGC 171 >seq291425 Length=203 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| |||||| |||| || ||| |||| || | || ||||| Sbjct 49 AAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAGCAGAGGCTGATCTTTGCTGGCAAG 108 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| |||| |||||| || |||||||||||||| ||||| | || ||||| Sbjct 109 CAGCTGGAAGACGGGCGCACTCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTGCAC 168 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||| |||| || || Sbjct 169 CTGGTGCTGCGCCTGAGGGGAGG 191 >seq456222 Length=339 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||| ||||| ||| |||||||| || ||||| ||||| | || | Sbjct 53 CCTCATCTCTGCTAATAAGTTCATTGGAAAAAGTCAATCCAGGCATTAGGCCCCTCTTCT 112 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||||||||| || || || ||||||||||||| ||| || || || || || | Sbjct 113 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 172 Query 133037 CCACCA 133042 | |||| Sbjct 173 CAACCA 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494095712984320