Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq776727 93.3 2e-13 seq776728 86.0 2e-11 seq311310 86.0 2e-11 >seq776727 Length=1353 Score = 93.3 bits (102), Expect = 2e-13 Identities = 389/605 (64%), Gaps = 22/605 (4%) Strand=Plus/Minus Query 451898 GAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGT----C 451953 || |||||||| || || || || || || |||||||| || || | || || | Sbjct 1221 GAGATTGTGCTCGTGGGGGGCTCCACTCGTATTCCTAAGATCCAGAAGTTGCTGCAGGAC 1162 Query 451954 TTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATA 452013 ||||| | || ||| | || |||||| | ||||| |||||||||||||| || Sbjct 1161 TTCTTCAAT----GGCAAAGAGCTCAACAAGAGCATCAATCCAGATGAAGCTGTTGCTTA 1106 Query 452014 TGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGA---TGAAAAATTAGGAGA 452070 |||||| || || ||||||||||| || | || ||| | |||||| | ||| Sbjct 1105 TGGTGCAGCTGTGCAAGCAGCTATCCTCATGGG---AGACAAGTCTGAAAATGTGCAAGA 1049 Query 452071 TATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGAT 452130 | | || | | ||||| || || || || || || | || |||||||| ||| |||| Sbjct 1048 TCTGCTCCTGTTGGATGTCACCCCCCTGTCCCTGGGCATCGAGACAGCTGGCGGAGTGAT 989 Query 452131 GACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTAC 452190 |||| | | || || || || | ||||| ||| | | || || || | | Sbjct 988 GACTGCTCTCATCAAGCGTAACACCACCATTCCCACCAAACAAACGCAGACCTTCA--CC 931 Query 452191 AGCAAGT--GATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATG 452248 | | | | || |||||| |||| | || |||| |||||| || | || ||| Sbjct 930 ACCTACTCAGACAACCAAAGCAGTGTCTTAGTCCAGGTGTATGAAGGTGAGAGGGCTATG 871 Query 452249 ACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGG 452308 ||| || || || || || | ||| || || ||| || || || | Sbjct 870 ACAAAGGACAACAACTTGCTGGGCAAGTTTGACCTAACAGGCATCCCCCCAGCACCCCGT 811 Query 452309 GGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGT 452368 ||| ||||| || || | || | || | ||||| |||||||| || ||||| ||| Sbjct 810 GGAGTCCCTCAGATCGAGGTAACTTTCGACATAGATGCTAATGGTATCCTGAATGTCAGT 751 Query 452369 GCAGTTGAAAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCG 452427 || || || || | || ||| |||| || || || || || ||||| || || Sbjct 750 GCTGTGGACAAGAGTACAGGGAAA-GAGAACAAGATAACCATCACCAATGACAAGGGTCG 692 Query 452428 -TTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATG 452486 ||| | ||||| |||||||| ||||| | || ||||| |||| ||| | || | Sbjct 691 CCTTAGC-AAAGATGATATTGACCGTATGGTGCAAGAGGCAGAGAAATACAAAGCAGAGG 633 Query 452487 ATGAA 452491 ||||| Sbjct 632 ATGAA 628 >seq776728 Length=856 Score = 86.0 bits (94), Expect = 2e-11 Identities = 195/291 (67%), Gaps = 7/291 (2%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || || || || || ||||| |||||||| | || || || || || ||||||| Sbjct 304 ATGCTGTTATCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATG 245 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || || |||| | || || | || ||||| ||||| || |||||||||||| Sbjct 244 CTGGTACCATCACTGGCCTCAACGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTA 185 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAA-----ACAGAAGaaaaaaaTATTTTAGTATT 451494 | || || || || ||| || ||| | | | | ||| || ||| | | | || Sbjct 184 TTGCCTACGG-CTTGGACAA-GAAAGGTACTCGGGCTGGAGAGAAGAATGTGCTCATCTT 127 Query 451495 TGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGA 451554 ||| || || || || ||| |||| || | ||| | ||||| ||||| | ||||| Sbjct 126 TGACTTGGGAGGGGGCACTTTTGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGA 67 Query 451555 AGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || ||| | || ||| || || ||||| || || || || |||| || Sbjct 66 GGTGAAGTCCACAGCTGGGGACACCCATCTGGGTGGGGAGGACTTTGACAA 16 >seq311310 Length=349 Score = 86.0 bits (94), Expect = 2e-11 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| |||| || ||||||| || || || ||||||||||| || || || || || Sbjct 136 GTTACTCATGCTGTTGTTACTGTGCCAGCCTACTTCAATGATGCTCAGCGTCAGGCTACA 77 Query 451373 AAAGATGCAGG-ACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| || ||| |||||||| || || || | || ||||||||||| || Sbjct 76 AAAGATGCTGGTACA-ATTGCTGGATTGAACGTGATGCGCATTATTAATGAGCC 24 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1951113347603784