Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq776727 114 1e-19 seq672784 102 6e-16 >seq776727 Length=1353 Score = 114 bits (126), Expect = 1e-19 Identities = 334/507 (66%), Gaps = 8/507 (2%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 ||| | ||||| || |||||||| ||||| | || || || || || || |||||||| Sbjct 749 GCACTGACATTCAGGATACCATTAGCATCTATGTCGAAAGTTACCTCGATCTGAGGGACT 808 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || | | || || ||||| ||| | | ||| | ||||| || || || || Sbjct 809 CCACGGGGTGCTGGGGGGATGCCTGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCCTTT 868 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT--AGTAACTACAGTTTGATTATCTGAAT 517436 || | | ||||| || | | |||| || ||| | |||| || ||||| | Sbjct 869 GTCATAGCCCTCTCACCTTCATACACCTGGACTAAGACACTGC--TTTGGTTGTCTGAGT 926 Query 517437 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495 | || || || |||| ||| ||| ||||| || ||||| | | || | | Sbjct 927 AGGTGGTGAAGG-TCTGCGTTTGTTTGGTGGGAATGGTGGTGTTACGCTTGATGAGAGCA 985 Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | || || ||||| || | || || || || || |||||||| | |||| Sbjct 986 GTCATCACTCCGCCAGCTGTCTCGATGCCCAGGGACAGGGGGGTGACATCCAACAGGAGC 1045 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || ||| | |||||| | | || | || ||||||||||| | ||| |||||| Sbjct 1046 AGATCTTGCACATTTTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCTGCACCA 1105 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-T 517674 || |||||||||||||| ||||| | | | || || | ||| |||||||| || | Sbjct 1106 TAAGCAACAGCTTCATCTGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 1165 Query 517675 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734 || | || || | | |||||||||||||| || || || || | ||||| || || Sbjct 1166 TGCAGCAACTTCT-GGATCTTAGGAATACGAGTGGAGCCCCCCACGAGCACAATCTCCTG 1224 Query 517735 CACCTGTGATTTATCCAGTTTTGAATC 517761 | ||| |||||| || || | ||| Sbjct 1225 GATCTGGCCTTTATCAAGCTTGGCATC 1251 >seq672784 Length=307 Score = 102 bits (112), Expect = 6e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| || || ||| | || ||||| ||||| || |||||| | ||| | | | ||||| Sbjct 70 TGTTGTTGCTACAGTGGCGTTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 129 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 130 TCATTATGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGAAGAGCTGGTCG 189 Query 367113 TGATGG 367118 |||||| Sbjct 190 TGATGG 195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3732588657478588