Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq776727 120 2e-21 seq511515 116 3e-20 seq511514 95.1 1e-13 >seq776727 Length=1353 Score = 120 bits (132), Expect = 2e-21 Identities = 331/505 (66%), Gaps = 2/505 (0%) Strand=Plus/Minus Query 552087 GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGA 552146 ||| | ||| |||||||| | | | || || |||||||| || || || || || | Sbjct 1251 GATGCCAAGCTTGATAAAGGCCAGATCCAGGAGATTGTGCTCGTGGGGGGCTCCACTCGT 1192 Query 552147 ATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAG 552205 |||||||| || | | || | || ||| || |||||| ||| | | || | || Sbjct 1191 ATTCCTAAGATCCAGAAGTTGCTGCAGGACTTCTT-CAATGGCAAAGAGCTCAACAAGAG 1133 Query 552206 TGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGG 552265 | ||||||||||| |||||||| |||||||| || | ||||||||||| || || Sbjct 1132 CATCAATCCAGATGAAGCTGTTGCTTATGGTGCAGCTGTGCAAGCAGCTATCCTCATGGG 1073 Query 552266 ACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGG 552325 | | | |||||| | ||| || | | || | ||||| || || || || || || Sbjct 1072 AGACAAGTCTGAAAATGTGCAAGATCTGCTCCTGTTGGATGTCACCCCCCTGTCCCTGGG 1013 Query 552326 TTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTG 552385 | || |||| ||| || | |||||| ||| ||| | | || || || ||||| Sbjct 1012 CATCGAGACAGCTGGCGGAGTGATGACTGCTCTCATCAAGCGTAACACCACCATTCCCAC 953 Query 552386 TAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAAT 552445 ||| || | | || | || || ||||| || |||| ||| | | || | Sbjct 952 CAAACAAACGCAGACCTTCACCACCTACTCAGACAACCAAAGCAGTGTCTTAGTCCAGGT 893 Query 552446 TTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGA 552505 | |||||| || || | || || || || || || || | ||| | || Sbjct 892 GTATGAAGGTGAGAGGGCTATGACAAAGGACAACAACTTGCTGGGCAAGTTTGACCTAAC 833 Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565 ||| || || || || || |||||||| || || || || || |||||||| || ||||| Sbjct 832 AGGCATCCCCCCAGCACCCCGTGGAGTCCCTCAGATCGAGGTAACTTTCGACATAGATGC 773 Query 552566 CAATGGAATTTTGAATGTGACTGCT 552590 ||||| || ||||||| | |||| Sbjct 772 TAATGGTATCCTGAATGTCAGTGCT 748 >seq511515 Length=2794 Score = 116 bits (128), Expect = 3e-20 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||| | |||||||| || |||||||||||||| || || || || || ||||||| Sbjct 367 ATGCTGTAGTCACTGTACCGGCCTATTTTAATGACTCCCAGCGCCAGGCCACAAAAGATG 426 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||||| || || ||||| || || |||||||| || || || |||||||| Sbjct 427 CTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAACGAGCCAACAGCTGCTGCTA 486 Query 550518 TTGCATATGGACTTGATAA 550536 | || ||||| || ||||| Sbjct 487 TAGCCTATGGTCTGGATAA 505 >seq511514 Length=332 Score = 95.1 bits (104), Expect = 1e-13 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | ||||| ||| | |||||||| ||| ||||||||||| | ||| |||| || Sbjct 29 AGCTGTTGGTATCGATCTCGGAACCACCTATTCCTGTGTTGGTGTATTCCAACATGGGAA 88 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || ||||| ||||||||||| || |||||||| || || ||| || || |||| || Sbjct 89 GGTGGAAATCATTGCCAATGACCAGGGTAACAGGACCACACCAAGCTACGTCGCTTTTAC 148 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACC 550168 || || || || |||| ||||| || || | |||| || || ||||| ||| Sbjct 149 AGATACAGAGAGGTTGATTGGCGATGCCGCCAAGAACCAAGTTGCAATG--AATCCCACC 206 Query 550169 AATACTATTTTTG 550181 || || | |||| Sbjct 207 AACACAGTCTTTG 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3977892362049020