Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq511515 120 2e-21 seq672784 89.7 3e-12 seq511514 89.7 3e-12 >seq511515 Length=2794 Score = 120 bits (132), Expect = 2e-21 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 |||||| |||| ||| | ||||| || || ||||||||||| || || || || || || Sbjct 360 GTAACTAATGCTGTAGTCACTGTACCGGCCTATTTTAATGACTCCCAGCGCCAGGCCACA 419 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| |||| |||||||| || ||||| | || ||||| || || |||||||| Sbjct 420 AAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAACGAGCCAACAGCT 479 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || | || |||||||| |||||||| Sbjct 480 GCTGCTATAGCCTATGGTCTGGATAAGAA 508 Score = 95.1 bits (104), Expect = 8e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || ||||| |||||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 2064 GGCATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 2123 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| || || ||||| ||||| ||||| Sbjct 2124 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 2155 >seq672784 Length=307 Score = 89.7 bits (98), Expect = 3e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 |||||||| || ||||| || |||||||||||||| ||| || | ||||| || ||| Sbjct 195 CCATCACGACCAGCTCTTCCAATTTCTTGATAATAGGATTCCATTTCCTTAGGGGCACCA 136 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 ||||| || || | | ||||| |||||| || ||||||||||| || | ||| ||| Sbjct 135 TAATGAATAACCATCCGGATATCTGCTTTATTGATGCCCATTCCAAACGCCACTGTAGCA 76 Query 627889 AC 627890 || Sbjct 75 AC 74 >seq511514 Length=332 Score = 89.7 bits (98), Expect = 3e-12 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||| ||| | ||||| || || ||||| | ||| | ||| |||| || || | Sbjct 34 TTGGTATCGATCTCGGAACCACCTATTCCTGTGTTGGTGTATTCCAACATGGGAAGGTGG 93 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 |||| |||||||||||||| ||||| || || |||||| || || ||||||| || | Sbjct 94 AAATCATTGCCAATGACCAGGGTAACAGGACCACACCAAGCTACGTCGCTTTTACAGATA 153 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCC 474501 | || | ||||| ||||| || || | |||| |||| ||||| Sbjct 154 CAGAGAGGTTGATTGGCGATGCCGCCAAGAACCAAGTTGCAATGAATCC 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3226485489645704