Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq940523 143 3e-29 seq940522 122 1e-22 seq193592 104 3e-17 >seq940523 Length=1489 Score = 143 bits (158), Expect = 3e-29 Identities = 240/344 (70%), Gaps = 5/344 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || ||| |||| ||| | || || || ||||| || || || | Sbjct 506 TGTGTCGCAAATATTCTTCCAAACACTTCACCGCAAAAGGATCAACATCAGTATCAAACT 447 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| | || ||||||| || |||||| ||| |||| Sbjct 446 TATTAGCAAAGAAGTGGTG---GTTTCGCAGCATCCAGTTCAGGTCTCCTACCCCAAACA 390 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | || || || |||| || ||||| | || ||||| | ||| | Sbjct 389 CACAGACAGAGCGAACATGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTAGACACAT 330 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | |||||| ||||||||||||| |||||||| || | || | ||| || || ||| | Sbjct 329 CTCCTTCGAAGTACTGCCACTTGACAAACCTAGCCAGTGCATTCATATCAGAAACGTCAT 270 Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | || | ||| || | ||| || || || ||| |||| || | ||| | || ||||| Sbjct 269 ACTTCT-CATTAGAAGAAACAGCGCCTGGGACGTCGGGGATTCTCTGAATCGTTGCCCAT 211 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAA 160387 |||| || || || ||||| ||||| || | ||| || || || Sbjct 210 AGGTACTCATCAGGACTGTAAGTGTCTTTTGCCCACTCAATAAA 167 >seq940522 Length=1005 Score = 122 bits (134), Expect = 1e-22 Identities = 273/405 (67%), Gaps = 4/405 (1%) Strand=Plus/Minus Query 160630 GGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGC 160689 |||| ||||| | |||||||| | || || | |||||| | || ||||| || | | Sbjct 930 GGTTGGTCTTTATAGGAAAGTCCATGCCACAGAGGTTTATTAGATATTTCCAGTTTGAAC 871 Query 160690 T-CAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCG 160748 | | | | || || |||||||||||||||||||||| || | |||||| ||||| Sbjct 870 TTCTTCTAAAG-AGATCTTTCATGCAATTAATATCTGCCTGTACCCTGCTCCATGAAGCA 812 Query 160749 TACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCC 160808 || || || |||||| | |||| | |||||| ||||| ||||| || || ||||| Sbjct 811 TATACAACACTCTCTAACTGGCTGGATATAAAGACATTATCAAAACAGGAGACTATTCCT 752 Query 160809 ACCACCGCCAGAAAGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTT 160867 ||| | | | || || | || | | |||| || || || | ||| || | || Sbjct 751 TTCACAG-CTGTAAAAAAAGATTCTGGAGATTTTCTATCAACATGGATGCAGTAAAAATT 693 Query 160868 CTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCAC 160927 |||||| || ||||| | || || | || || | ||||||||| || |||| | ||| Sbjct 692 CTGAGGAGCATAGATTGATCTCAGAAGTCTGTCAAGCATCTCTATTTTGTGATAAACCAC 633 Query 160928 GATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTT 160987 || ||||| || || ||||| || | || || || || | | | | ||| || Sbjct 632 TATTGAGTAAGCAATTGGAAATTCTGCTTCTTCATTGCTGAGAGGTTCCATAATGTATTT 573 Query 160988 TCGCGTCTTGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 | | ||||||| ||| | ||||| |||||||| ||||| Sbjct 572 CCTCATCTTGATGAAAGAGGAGCAATCTGTTGTCATGTTAATATA 528 >seq193592 Length=307 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 160836 GCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAAC 160895 ||||| | ||||||||||||||| || | |||||| |||||||||| | | || | | Sbjct 21 GCCTTGCTGTCCACGTGCACGCAGTAGACGTTCTGCGGCGCGTAGAGAGAGCGCAGGAGC 80 Query 160896 CTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTC 160955 | |||||||||||| ||||| || ||||| || || |||||||| || || || |||| Sbjct 81 CGCTCGAACATCTCGATCTTGTGGTGGATGACCATGGAGTAGGCAATGGGGAAGTCGGCT 140 Query 160956 TCCTC 160960 ||||| Sbjct 141 TCCTC 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570206001150480