Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq776727 210 3e-49 seq511515 206 3e-48 seq776728 187 3e-42 seq291424 167 3e-36 seq291425 132 6e-26 seq311309 118 1e-21 seq331414 113 6e-20 seq511514 102 1e-16 >seq776727 Length=1353 Score = 210 bits (232), Expect = 3e-49 Identities = 493/733 (67%), Gaps = 16/733 (2%) Strand=Plus/Minus Query 196151 GACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGAT 196210 || || ||||||||||| || | || || ||||| || || || ||| | || ||||| Sbjct 1353 GAGGGCATTGACTTCTACACCTCCATCACTCGTGCCCGCTTCGAGGAGCTCAATGCTGAT 1294 Query 196211 TTGTTTAGGAAGTGTA-TGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAA 196269 | ||| | || |||| || || || | | || ||||| || ||| | ||||| Sbjct 1293 CT-TTTCCGTGGTACCCTGGAGCCGGTGGAGAAGGCCCTGCGTGATGCCAAGCTTGATAA 1235 Query 196270 GTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACA 196329 || | | || ||||| || ||||| || || || |||||||| ||||| || | Sbjct 1234 AGGCCAGATCCAGGAGATTGTGCTCGTGGGGGGCTCCACTCGTATTCCTAAGATCCAGAA 1175 Query 196330 GATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGC 196389 | |||| |||||||||| ||||| | ||||| | ||||| || |||||||| Sbjct 1174 GTTGCTGCAGGACTTCTTCAATGGCAAAGAGCTCAACAAGAGCATCAATCCAGATGAAGC 1115 Query 196390 AGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAA---TAATAA 196446 |||||||||||||| || || || || ||||| |||| | | ||||| | | || Sbjct 1114 TGTTGCTTATGGTGCAGCTGTGCAAGCAGCTAT--CCTCATG-GGAGACAAGTCTGAAAA 1058 Query 196447 CGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGG 196506 || |||||||| || || | ||||| | ||| | |||||||| | || ||||| || Sbjct 1057 TGTGCAAGATCTGCTCCTGTTGGATGTCACCCCCCTGTCCCTGGGCATCGAGACAGCTGG 998 Query 196507 TGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGT 196566 || || |||||| | || | | ||||| || ||||| || || | || Sbjct 997 CGGAGTGATGACTGCTCTCATCAAGCGTAACACCACCATTCCCACCAAACAAACGCAGAC 938 Query 196567 CTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATA-TTCAAGTATATGAAG--GAGA 196623 ||| | || || || || || ||| ||| || || | || || ||||||| |||| Sbjct 937 CTTCACCACCTACTCAGACAACCAAAGCAGTG-TCTTAGTCCAGGTGTATGAAGGTGAGA 879 Query 196624 ACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAG 196682 ||| || ||||||| ||| | | || || | || || | || || || || Sbjct 878 GGGCT---ATGACAAAGGACAACAACTTGCTGGGCAAGTTTGACCTAACAGGCATCCCCC 822 Query 196683 CTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTC 196742 | |||||| | || || || ||||| | || ||||| ||||| || ||||| || | Sbjct 821 CAGCACCCCGTGGAGTCCCTCAGATCGAGGTAACTTTCGACATAGATGCTAATGGTATCC 762 Query 196743 TAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATG 196802 | || |||| |||| ||||||| | | || ||| | ||||| || ||||||| Sbjct 761 TGAATGTCAGTGCTGTGGACAAGAGTACAGGGAAAGAGAACAAGATAACCATCACCAATG 702 Query 196803 ACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTACA 196862 ||||||| || ||| || || || ||||| |||||||| ||||| || || || |||| Sbjct 701 ACAAGGGTCGCCTTAGCAAAGATGATATTGACCGTATGGTGCAAGAGGCAGAGAAATACA 642 Query 196863 GGGAAGAAGACGA 196875 | ||| || || Sbjct 641 AAGCAGAGGATGA 629 >seq511515 Length=2794 Score = 206 bits (228), Expect = 3e-48 Identities = 366/531 (69%), Gaps = 2/531 (0%) Strand=Plus/Plus Query 195875 ATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATA 195934 || ||||| || || ||||| || |||||||| ||| |||| | |||||||| ||| || Sbjct 638 ATTTTTGACCTTGGAGGTGGCACCTTTGATGTGTCAATTCTGACTATTGAAGATGGCATC 697 Query 195935 TTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGT 195994 || || || || | ||||| ||||| ||||| | ||||| |||||||| || ||| Sbjct 698 TTTGAGGTGAAATCCACTGCAGGTGACACTCACTTGGGTGGAGAAGATTTTGACAACCGT 757 Query 195995 CTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAAT 196054 | || || || || ||| ||| || ||| | |||||||| || || || Sbjct 758 ATGGTCAACCACTTCATTGCTGAATTCAAGCGCAAGCACAAGAAAGACATCAGTGAGAAC 817 Query 196055 CCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCT 196114 || || ||||||| ||| | ||||| ||||||||||| || || || || || || Sbjct 818 AAGAGAGCAGTTCGTCGCCTTCGTACTGCGTGTGAACGTGCAAAGCGTACCCTGTCATCA 877 Query 196115 ACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACT 196174 | | ||| | | |||| || ||||| | | ||| || ||||||||||| ||| | Sbjct 878 AGCACACAAGCCAGTATTGAAATCGATTCTCTCTATGAGGGTATTGACTTCTACACATCC 937 Query 196175 ATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCT 196234 || ||| | || ||||| || ||| | || |||| |||| | |||| ||| Sbjct 938 ATCACCAGAGCTCGTTTCGAGGAGCTGAATGCTGACCTGTTCCGTGGCACCCTGGATCCT 997 Query 196235 GTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTT 196294 || || | | || || || || ||| |||| ||||| || | |||| || || || Sbjct 998 GTGGAGAAGGCCCTGCGGGATGCCAAGCTGGACAAGTCACAGATCCATGACATCGTGCTG 1057 Query 196295 GTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAG-CTTCTTCAATAA 196353 || || || || || || || || |||||||| | ||| | | || ||||||||| Sbjct 1058 GTTGGGGGCTCTACTCGCATCCCAAAGATTCAGAAACTGC-TGCAAGACTTCTTCAACGG 1116 Query 196354 TAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGC 196404 ||||| || ||||| | ||||| || |||||||| || ||||||||||| Sbjct 1117 CAAAGAGTTGAACAAGAGCATCAATCCTGATGAAGCCGTGGCTTATGGTGC 1167 Score = 102 bits (112), Expect = 1e-16 Identities = 110/143 (77%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 |||| || || |||||||| || || || | ||| || || || ||||| ||||| || | Sbjct 367 ATGCTGTAGTCACTGTACCGGCCTATTTTAATGACTCCCAGCGCCAGGCCACAAAAGATG 426 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCA 195826 ||| | ||||| || || || ||| || |||||||||| || |||||||| ||||| Sbjct 427 CTGGAACCATTGCAGGGCTCAA-TGTACTGCGAATTATCAACGAGCCAACAGCTGCTGCT 485 Query 195827 ATTGCTTATGGTCTGGACAAGAA 195849 || || ||||||||||| ||||| Sbjct 486 ATAGCCTATGGTCTGGATAAGAA 508 >seq776728 Length=856 Score = 187 bits (206), Expect = 3e-42 Identities = 463/697 (66%), Gaps = 13/697 (2%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || |||||| | || || || || || || || ||||| | || ||| Sbjct 710 GCCATCGGCATCGATCTGGGCACCACGTATTCCTGCGTGGGTGTCTTCCAGCATGGCAAA 651 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| | || ||||| || ||||| || || || || || ||||| || Sbjct 650 GTGGAGATCATCGCCAACGACCAGGGGAACCGCACCACACCCAGCTATGTGGCCTTCACC 591 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || || ||| | || ||||| || || || || || |||||||| | ||| Sbjct 590 GATACAGAGCGCCTCATCGGGGATGCTGCCAAGAACCAAGTGGCGATGAACCCCACCAAC 531 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || |||| || || |||||||| || || ||||||| || | || || Sbjct 530 ACCATCTTCGATGCCAAGCGTCTCATCGGCCGCAAGTACGATGACCCCACGGTGCAGTCA 471 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCG-GTGTGGCTGATAAGCCTATGATTAA 195597 || || ||| ||||| | | || || || | | ||| ||||| | | | | Sbjct 470 GACATGAAGCACTGGCCCTTCCGTGTGGTGAACGAGAGCGGC----AAGCCCAAGGTGCA 415 Query 195598 TGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGT 195656 || || | | || |||| ||| | || |||| || || || || |||||| Sbjct 414 AGTGGAGTACAAGGGCGAGATGAAG-ACCTTCTTCCCAGAGGAGATCAGCTCCATGGTGC 356 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | | ||||||||||||| ||| || ||| |||| |||| || | |||| ||| Sbjct 355 TCACCAAGATGAAGGAGATTGCTGAGGCTTATCTGGGGAAAAAGGTACAGAATGCTGTTA 296 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | || || ||||||||||||| ||| || || || ||||| || || || |||| | | | Sbjct 295 TCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGTACCA 236 Query 195777 TTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATG 195836 | | || || ||| | | ||||||||||| || ||||| ||||| ||||| || | Sbjct 235 TCACTGGCCTCAACGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATTGCCTACG 176 Query 195837 GTCTGGACAAGA-----ACAAGGAC-GAAGATAAAAATGTATTGATCTTTGATCTCGGTG 195890 | ||||||||| || || | | ||| || ||||| | |||||||| | || | Sbjct 175 GCTTGGACAAGAAAGGTACTCGGGCTGGAGAGAAGAATGTGCTCATCTTTGACTTGGGAG 116 Query 195891 GTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTA 195950 | || || |||||||| || | || | ||||| | ||| || || || || ||| | | Sbjct 115 GGGGCACTTTTGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGAGGTGAAGTCCA 56 Query 195951 CTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | ||||| || || ||||| ||||| || || || || Sbjct 55 CAGCTGGGGACACCCATCTGGGTGGGGAGGACTTTGA 19 >seq291424 Length=270 Score = 167 bits (184), Expect = 3e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| ||||| || || |||||| | ||||| || | Sbjct 8 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTGGAACCCAGT 67 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || ||||||||||||| || || ||||| |||||||| ||||||||| Sbjct 68 GACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAG 127 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || || ||||| || ||||| ||||| || || || || |||| |||||| Sbjct 128 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACTCTGTCTGACTACAAC 187 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || |||||||| ||||| || ||||| || Sbjct 188 ATCCAGAAGGAGTCCACTCTCCATCTTGTCCT 219 >seq291425 Length=203 Score = 132 bits (146), Expect = 6e-26 Identities = 135/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 ||||| || ||||||||| | ||||| || || ||| | || |||||||| || || Sbjct 1 ATCACTCTGGAGGTTGAGCCCAGTGACACCATTGAGAACGTGAAGGCCAAGATCCAGGAC 60 Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017 ||||| |||||||| ||||||||||| | || || |||||||| || ||||| ||||| Sbjct 61 AAGGAGGGCATTCCCCCCGATCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGAC 120 Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 || || || || |||| |||||| | || |||||||| || || ||||| || || Sbjct 121 GGGCGCACTCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCT 176 >seq311309 Length=2049 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 196637 AAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGT 196696 ||||| |||||||| || |||||||| ||| |||| || || || |||| || | || Sbjct 359 AAGGACAACCATCTCCTGGGAACTTTTGATCTGACTGGAATCCCTCCTGCTCCTCGTGGC 300 Query 196697 GTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCT 196756 || ||||||||| | ||| ||| || ||||| | |||||||| || ||||||||| Sbjct 299 GTCCCACAGATTGAAGTTACCTTTGAAATAGATGTGAATGGAATCCTTCGTGTCACAGCT 240 Query 196757 GAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTT 196816 || ||||||| |||| || | |||||| ||||| ||||| || |||||| Sbjct 239 GAAGACAAGGGCACTGGGAACAAAAACAAGATTACAATTACAAATGATCAGAATCGGCTT 180 Query 196817 TCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGT 196859 | ||||| ||||| | |||||| | ||||| || |||| Sbjct 179 ACACCAGAGGAGATTGAGAGGATGGTTAATGATGCTGAGAAGT 137 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/174 (72%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873 |||||| ||||| ||||| ||||| ||||||||| ||| || || || || || Sbjct 1985 AACAGCTGCTGCCATTGCATATGGATTGGACAAGAGAGAGGGTGA-GAAGAACATCC-TT 1928 Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933 | | ||||| || |||||||| || ||||||||||| || || | ||||| ||| | Sbjct 1927 G-TATTTGACCTGGGTGGTGGAACTTTTGATGTCTCCCTCCTGACAATTGACAATGGAGT 1869 Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || ||||| |||||| |||||| || || || ||||| ||||| || || Sbjct 1868 CTTTGAAGTTGTGGCTACCAATGGTGACACACACCTGGGTGGAGAAGACTTTGA 1815 >seq331414 Length=254 Score = 113 bits (124), Expect = 6e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || |||||||| || || || ||||||||||| || |||||| Sbjct 4 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAG 63 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || || ||||| || ||||| ||||| || || ||||| |||| |||||| Sbjct 64 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 123 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || |||||||| || || || || || || | || ||||||| Sbjct 124 ATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTCAGGGGTGG 170 >seq511514 Length=332 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 195298 AGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG 195357 |||| ||||||||||| | ||||| || || || ||||||||||||| ||| ||| Sbjct 29 AGCTGTTGGTATCGATCTCGGAACCACCTATTCCTGTGTTGGTGTATTCCAACATGGGAA 88 Query 195358 TGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTAC 195417 || || || || | |||||||| || ||| | || || ||| ||||| || ||||| Sbjct 89 GGTGGAAATCATTGCCAATGACCAGGGTAACAGGACCACACCAAGCTACGTCGCTTTTAC 148 Query 195418 AGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAA 195477 ||||| || | | |||| |||||||| || || || || ||||| || | ||| Sbjct 149 AGATACAGAGAGGTTGATTGGCGATGCCGCCAAGAACCAAGTTGCAATGAATCCCACCAA 208 Query 195478 TACTGTCTTTG 195488 || ||||||| Sbjct 209 CACAGTCTTTG 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 649869388286560