Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq609244 138 2e-27 seq609247 109 1e-18 >seq609244 Length=1808 Score = 138 bits (152), Expect = 2e-27 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438 || ||||||||||| ||| | || ||||| || |||||| ||||||||||||| ||||| Sbjct 1078 GCTTTATGGTGGTATTATGTCTCGAAAGGAATTGAATACCTAGATACAGTGTTCTTCATC 1137 Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498 || ||||| || || || || |||| ||||| || || ||||| ||||| || ||||| Sbjct 1138 CTGAGGAAGAAATTCAACCAAATTAGTTTTCTTCATGTCTATCACCATTTCACCATGTTC 1197 Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 ||||| | ||| | |||||||| ||| ||||||| || || Sbjct 1198 ACTTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACA 1238 >seq609247 Length=1099 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 58669 GGTACAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTT 58728 ||| || |||||| | |||| || ||||| ||| |||| ||||| || ||||| || || Sbjct 871 GGTGCAGTTCCATGTGACTATTGGCCATACAGCTTTGTCTATTTATATTGATTGTCCTTT 930 Query 58729 TCCAAAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGG 58788 ||| ||||||| ||| ||| || || ||||| |||| || || || || |||||||| Sbjct 931 TCCTAAATGGATGCACTGGGGTGTAATTTTCTATGCTATCACCTTCATTTTCTTGTTTGG 990 Query 58789 TAACTTCTATTTTAGAACATACAAG 58813 ||||||||| | | | ||||| ||| Sbjct 991 TAACTTCTACTATCGGACATATAAG 1015 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600 || ||||| || |||||| ||||||| ||||| |||||||||||||| | ||||| || Sbjct 41 GCTTTTTTTGGAGCTCAGATGAATTCATTTATTCATGTTATTATGTACATGTATTACGGA 100 Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660 | || || ||||| | || || | || ||| | |||||||| || ||| | |||||| Sbjct 101 TTAGCTGCCTGTGGCCCTAAAGTTCAGAAATATCTGTGGTGGAAACGGTACTTGACTATA 160 Query 58661 ATGCAATTGGTA 58672 |||| |||||| Sbjct 161 TTGCAGTTGGTA 172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 892434776505280