Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq291424 132 5e-26 seq186997 96.9 3e-15 seq291425 93.3 4e-14 seq331414 89.7 5e-13 >seq291424 Length=270 Score = 132 bits (146), Expect = 5e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || || ||| | ||| || ||||||||||| Sbjct 204 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCGTCTTCCAGCTGCTTGCCA 145 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || |||| |||||| ||||| || ||||| |||||||| |||||| ||| Sbjct 144 GCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCTTTG 85 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| |||| ||||| || | ||||| ||| ||||| ||||| || Sbjct 84 ACATTCTCGATGGTGTCACTGGGTTCCACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTC 25 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 24 TTCACGAAGATCTGCATG 7 >seq186997 Length=774 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 ||||| || || || | |||||| |||||||||||||| |||| ||||| |||||| Sbjct 450 TACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 509 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 || || |||||||| | ||| |||||||||||||| || |||||| || ||||| Sbjct 510 CTTTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGGGTGCCAGTCTCTGTCTGCG 567 >seq291425 Length=203 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| || || ||| | ||| || ||||||||||| Sbjct 162 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCGTCTTCCAGCTGCTTGCC 103 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||| ||||| || ||||| |||||||| |||||| ||| Sbjct 102 AGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTT 43 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 | | ||||| ||||| ||||||| || || | |||| Sbjct 42 CACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGA 2 >seq331414 Length=254 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||| ||||| || ||||| || || ||| | ||| || ||||| Sbjct 147 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTG 88 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| ||| | || |||| |||||| || ||||| |||||||| ||||| |||||| Sbjct 87 CTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCCTGGATCTT 28 Query 133577 TTGCTTGAGCTGCTCAACCGTGTC 133600 ||| | | ||||| ||||| Sbjct 27 GGCCTTCACATTCTCAATGGTGTC 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477547249365520