Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq603078 145 9e-30 seq193592 82.4 9e-11 >seq603078 Length=1282 Score = 145 bits (160), Expect = 9e-30 Identities = 406/609 (67%), Gaps = 17/609 (3%) Strand=Plus/Plus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | ||||| | || | ||| || || |||| |||| | || | |||| Sbjct 545 GCCAGATCTCTTGGGGATAGAAAATCTTCCACATGGATAAAAGAGTCTGCTGGAATGTAA 604 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || ||||| || ||||| || | || ||||| | || || | || |||| ||||| Sbjct 605 TTCTCGTAGTTTTCTCTGGAAGGGCCCAGTACGACTGGCACTGATCCAGCCAGAAGAGCA 664 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| ||||| || ||||| || || |||| | || || ||||||| ||||||||| Sbjct 665 TTGTAAAGTTTCTCAGTAATGTAATCTTTGTGGATTGAATTTTCAAACGAAAGATAGAAT 724 Query 177126 TTACA--GGAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183 || || | ||||||| || || |||| | ||| | || ||||| | | | Sbjct 725 TTGCAACTGGAGATAGT--TGGAATTAAGTTTTTATCATTGACGTAGTCTCCAAAGGCTT 782 Query 177184 TCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACG 177242 ||||| ||| || || |||| ||| || ||||| ||| || || || || | Sbjct 783 GGCCGTAGGTATGGATTTCAATGTATTTGCTAAGCTCATTGTAATA-CTTGACTCGAGCA 841 Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGG 177301 || || ||||||||| || || ||||| ||||| || || ||||| | || || Sbjct 842 TGCTCAGGGTTCCAATTACTTACAACCCAACAAACCAAATT-TTCTTTACTTGGCAC--- 897 Query 177302 ATTCGATA-CTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCC 177359 ||| ||| ||| | || | | | || | | | || ||||| ||||| |||||||| Sbjct 898 -TTC-ATATGTAAAGGAGCCTGTACCGACCATCATGGAGCCATAAGGCACCTGAATATCT 955 Query 177360 GAGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC-TTGTTTGAAGGG 177418 || || || | ||| || | || || || || |||| ||| || || | ||| || Sbjct 956 GAATCACGCCGGTAAGTCAGGGTTAGGTTAAAGAGGTGTTCAATGCCACTCTTTTGTGGA 1015 Query 177419 GCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTC 177478 | | | | | || ||||| ||||||||||| ||||| || || || | ||| |||| || Sbjct 1016 G-TATGAGTTGGAGATTCCAAGTTCATCCAAATCCATTTCTGGAATGGTGGCCTGGCTTG 1074 Query 177479 CGTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGC 177538 | ||||| | || |||| | || || ||||| |||| || || |||| || Sbjct 1075 CTGAGGTAAATTAGTCAGATCCCAGTTGATGTCCCTGTGATGAATGAGAACTGCATGGGA 1134 Query 177539 TTTGTAATA 177547 |||| ||| Sbjct 1135 CTTGTTATA 1143 >seq193592 Length=307 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 162859 GCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAAT 162918 || || || || ||||| |||||||| | ||||| || ||||||| | | ||| | Sbjct 21 GCCTTGCTGTCCACGTGCACGCAGTAGACGTTCTGCGGCGCGTAGAGAGAGCGCAGGAGC 80 Query 162919 CTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCC 162978 | |||||||||||| ||||| ||||| | || || || || || |||||||| || || Sbjct 81 CGCTCGAACATCTCGATCTTGTGGTGGATGACCATGGAGTAGGCAATGGGGAAGTCGGCT 140 Query 162979 TCCTC 162983 ||||| Sbjct 141 TCCTC 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571404065660800