Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq469292 127 6e-26 seq473682 118 3e-23 seq473832 113 1e-21 >seq469292 Length=423 Score = 127 bits (140), Expect = 6e-26 Identities = 73/75 (97%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 172 ATCGCTGAAGTAGCTCAGCTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 231 Query 2826 ACCCCGGGCTTCAGC 2840 ||||||||||||||| Sbjct 232 ACCCCGGGCTTCAGC 246 >seq473682 Length=348 Score = 118 bits (130), Expect = 3e-23 Identities = 70/73 (96%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 83 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 24 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 23 CCCGGGCTTCAGC 11 >seq473832 Length=446 Score = 113 bits (124), Expect = 1e-21 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||| | Sbjct 286 GCTGAAGTAGCTCAGCTGGGAGAGCGTTAGATTGAAGATCTAAAGGTCCCTGGTTCAATC 345 Query 2829 CCGGGCTTCAGC 2840 |||||||||||| Sbjct 346 CCGGGCTTCAGC 357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15681099286710