Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq624761 123 2e-23 seq430442 113 4e-20 >seq624761 Length=539 Score = 123 bits (136), Expect = 2e-23 Identities = 92/108 (85%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | |||||||||| ||||| ||||| || || |||||||| |||||| Sbjct 263 CAAGAAGTGCAAATCACAGAAGCACGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAT 322 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||||||||||||||| || || |||||||| |||||| Sbjct 323 ATACATTCAGAAATGTACAGTCTTCTTATTGACACGTACATTAAAGAT 370 >seq430442 Length=344 Score = 113 bits (124), Expect = 4e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||||||||| ||| | || ||||| |||||| ||||| ||||||| Sbjct 245 TGATGGCCTTGCCACCTTGCCATGCTCTTTGCCAGTTCTACGTTCTAAATGGCGAACTGT 186 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| |||| || || || || || ||||||||||| || || || || || || | Sbjct 185 CTTGCCAACTGTACCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 126 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || ||||| || || || || Sbjct 125 GCTATTCACTGCTCACATACATGATAGCCCATGTCAC 89 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 392747646547990