Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq511515 203 1e-46 seq776728 134 4e-26 seq331414 114 4e-20 seq776727 104 7e-17 seq311309 104 7e-17 seq291425 96.9 1e-14 seq311310 91.5 4e-13 seq456222 87.8 5e-12 >seq511515 Length=2794 Score = 203 bits (224), Expect = 1e-46 Identities = 374/541 (69%), Gaps = 12/541 (2%) Strand=Plus/Plus Query 349770 TTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGG 349829 ||||||||||||| | || ||||| || |||||||| ||| | || || ||||||| | Sbjct 633 TTCTTATTTTTGACCTTGGAGGTGGCACCTTTGATGTGTCAATTCTGACTATTGAAGATG 692 Query 349830 GAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATA 349889 | || ||||| || ||| | ||||| ||||| || || | ||||||||||||||||| | Sbjct 693 GCATCTTTGAGGTGAAATCCACTGCAGGTGACACTCACTTGGGTGGAGAAGATTTTGACA 752 Query 349890 ATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGA 349948 | ||| | || || || || ||||| ||||| ||||| || | || || | Sbjct 753 ACCGTATGGTCAACCACTTCATTGCTGAATTCAAGCG-CAAGCACAAGAAAGACATCAGT 811 Query 349949 GATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTA 350008 || || |||||| | |||||||| | ||||||||||||||||| |||||| || | Sbjct 812 GAGAACAAGAGAGCAGTTCGTCGCCTTCGTACTGCGTGTGAACGTGCAAAGCGTACCCTG 871 Query 350009 TCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTT 350068 ||||| | || ||| || ||||||||| |||||||| ||| || | || |||| Sbjct 872 TCATCAAGCACACAAGCCAGTATTGAAATCGATTCTCTCTATGAGGGTATTGACTTCTAC 931 Query 350069 TCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTTAGAGCAACAA 350126 |||| || || | ||||| || || || || ||| || || || | | || Sbjct 932 ACATCCATCACCAGAGCTCGTTTCGAGGA--GCTGAATGCTGACCTGTTCCGTGGCACCC 989 Query 350127 TGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAG 350186 ||||||||||||| || | | ||||| || || ||| ||||| |||| Sbjct 990 TGGATCCTGTGGAGAAGGCCCTGCGGGATGCCAAGCTGGACAAGTCACAGATCCATGACA 1049 Query 350187 TAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTT 350246 | || | ||||| || ||||| || || ||||| |||| | | || || || | Sbjct 1050 TCGTGCTGGTTGGGGGCTCTACTCGCATCCCAAAGATTCAGAAACTGCTGCAAGACTTCT 1109 Query 350247 TTAATGGCAAAGAACCTT---CTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTG 350303 | || |||||||| || | ||| | || ||||| |||||||| || || ||||||| Sbjct 1110 TCAACGGCAAAGA--GTTGAACAAGAGC-ATCAATCCTGATGAAGCCGTGGCTTATGGTG 1166 Query 350304 C 350304 | Sbjct 1167 C 1167 Score = 145 bits (160), Expect = 2e-29 Identities = 359/535 (67%), Gaps = 10/535 (2%) Strand=Plus/Minus Query 183262 CTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGAT-AATTCTTTGCCATTA 183320 |||||||||| || || |||||||| || || || | | | | || |||||||| || Sbjct 1169 CTGCACCATAAGCCACGGCTTCATCAGGATTGAT-GCTCTTGTTCAACTCTTTGCCGTTG 1111 Query 183321 AAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATACT 183380 || || ||| |||| || ||||| ||||| || | ||| || || || || | || Sbjct 1110 AAGAAGTCTTGCAGCAGTTTCTGAATCTTTGGGATGCGAGTAGAGCCCCCAACCAGCACG 1051 Query 183381 ACTTCATCGATATT--ACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGT 183438 | |||| ||| | |||| | | | ||| | ||| | | || || ||||| | Sbjct 1050 ATGTCATGGATCTGTGACTTGTCC-AGCTTG-GCATCCCGCAGGGCCTTCTCCACAGGAT 993 Query 183439 CCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATG 183498 ||| || | || | || | | ||| || || | ||||| || | |||| Sbjct 992 CCAGGGTGCCACGGAACAGGTCAGCATTCAGCTCCTCGAAACGAGCTCTGGTGATGGATG 933 Query 183499 aaaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGATG 183558 | ||||||||||| | ||| | ||||| |||||||| | |||||| ||||| Sbjct 932 TGTAGAAGTCAATACCCTCATAGAGAGAATCGATTTCAATACTGGCTTGTGTGCTTGATG 873 Query 183559 ATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTAT 183618 | | || | || || |||||||| || || | || ||||| | || ||| || | Sbjct 872 ACAGGGTACGCTTTGCACGTTCACACGCAGTACGAAGGCGACGAACTGCTCTCTTGTTCT 813 Query 183619 CTGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATG-TTGAAG-TAATCT 183676 | | || |||| || || || | || ||||||| ||| || || |||| || | Sbjct 812 CACTGATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATACGGT 753 Query 183677 TGTATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATAT 183736 ||| |||||||||| ||||| || || || || || ||||| | ||| || ||||| || Sbjct 752 TGT--CAAAATCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAGAT 695 Query 183737 TCCGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAAA 183791 || ||||||||| | | |||||| |||||||| || ||||| || | |||||| Sbjct 694 GCCATCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAA 640 Score = 120 bits (132), Expect = 9e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || |||||| ||||||| | |||||||| |||||||||||||| ||||||| || Sbjct 357 ACTGTAACTAATGCTGTAGTCACTGTACCGGCCTATTTTAATGACTCCCAGCGCCAGGCC 416 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 |||||||||||||| | |||||| ||| | ||||| || |||| || || || || || Sbjct 417 ACAAAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAACGAGCCAACA 476 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAA 349746 ||||| || || || ||||| || ||||| Sbjct 477 GCTGCTGCTATAGCCTATGGTCTGGATAA 505 >seq776728 Length=856 Score = 134 bits (148), Expect = 4e-26 Identities = 236/340 (69%), Gaps = 8/340 (2%) Strand=Plus/Minus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGA-TGCTGTTATTAC 349620 || |||||||| |||||||| || ||| | || |||| || || || ||||||||| || Sbjct 350 AAGATGAAGGAGATTGCTGAGGCTTATCTGGG-GAAAAAGGTACAGAATGCTGTTATCAC 292 Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680 || || || || || ||||| ||||||| || || ||||||||||| | ||| | Sbjct 291 AGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGTACCATCAC 232 Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740 || | || || | | || || ||||| ||||| || || || ||||| || || | Sbjct 231 TGGCCTCAACGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATTGCCTACGGCTT 172 Query 349741 TGATAA-AATG-----AGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 || || || | | | ||| || ||| | || || ||||| || || || || Sbjct 171 GGACAAGAAAGGTACTCGGGCTGGAGAGAAGAATGTGCTCATCTTTGACTTGGGAGGGGG 112 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 ||||||||||| || | || || |||| || || || ||||| || || | || || Sbjct 111 CACTTTTGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGAGGTGAAGTCCACAGC 52 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGT 349894 ||| || || ||||| ||||| || || ||||| || ||| Sbjct 51 TGGGGACACCCATCTGGGTGGGGAGGACTTTGACAACCGT 12 >seq331414 Length=254 Score = 114 bits (126), Expect = 4e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || ||||| || || ||||| || || || || || ||||| | || ||||| ||| Sbjct 155 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 96 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| ||||| || | ||||||||||||||||| |||||||| ||| Sbjct 95 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCC 36 Query 140646 TGAATTTTAGCTTTTACATTATCAAT 140671 || || || || || ||||| ||||| Sbjct 35 TGGATCTTGGCCTTCACATTCTCAAT 10 >seq776727 Length=1353 Score = 104 bits (114), Expect = 7e-17 Identities = 303/461 (66%), Gaps = 12/461 (3%) Strand=Plus/Minus Query 350195 GTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGC 350254 || || || || || |||||||| || | || |||| || || || || |||||| Sbjct 1209 GTGGGGGGCTCCACTCGTATTCCTAAGATCCAGAAGTTGCTGCAGGACTTCTTCAATGGC 1150 Query 350255 AAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCA 350313 ||||| | | | ||| || | |||||||||||||||||||| |||||||| ||||| || Sbjct 1149 AAAGAGCTCAACAAGAGCA-TCAATCCAGATGAAGCTGTTGCTTATGGTGCAGCTGTGCA 1091 Query 350314 GGCATCTATTTTATCTGGAAATAAGAGTTCTAAAATTG---ATGATCTATTACTACTAGA 350370 ||| |||| | ||| | ||| ||| ||| || | ||||| | || | || Sbjct 1090 AGCAGCTATCCTCATGGGAGACAAG---TCTGAAAATGTGCAAGATCTGCTCCTGTTGGA 1034 Query 350371 TGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCC 350430 ||| || || || || || || | || || |||| | ||| ||||||| ||| || Sbjct 1033 TGTCACCCCCCTGTCCCTGGGCATCGAGACAGCTGGCGGAGTGATGACTGCTCTCATCAA 974 Query 350431 TAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCA 350490 | || | || | || || ||| | | || || || | || | |||| || || Sbjct 973 GCGTAACACCACCATTCCCACCAAACAAACGCAGACCTTCACCACCTACTCAGACAACCA 914 Query 350491 GCCAGCGGTAAC--AATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAAT 350548 ||| || | | | || || | ||||||||| | ||| || || || || || Sbjct 913 --AAGCAGTGTCTTAGTCCAGGTGTATGAAGGTGAGAGGGCTATGACAAAGGACAACAAC 856 Query 350549 AAACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATT 350608 || || | ||| ||||| | || || ||| || | ||||| |||||||| Sbjct 855 TTGCTGGGCAAGTTTGACCTAACAGGCATCCCCCCAGCACCCCGTGGAGTCCCTCAGATC 796 Query 350609 GAAGTCTCTTTCGATATTGATTCAAATGGTATTTTAAATGT 350649 || || ||||||| || ||| | |||||||| | ||||| Sbjct 795 GAGGTAACTTTCGACATAGATGCTAATGGTATCCTGAATGT 755 >seq311309 Length=2049 Score = 104 bits (114), Expect = 7e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 |||||||| | ||| | |||||||||||||| || || || ||| | ||||| | | Sbjct 1207 ATTGATGAGATTGTTCTTGTTGGTGGTTCTACTCGCATCCCCAAAATACAACAACTTGTT 1148 Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 ||||| || ||||| || || |||||| | |||||||||||||| ||||| || Sbjct 1147 AAAGAGTTCTTCAATGGGAAGGAGCCTTCTCGTGGCATTAATCCAGATGAGGCTGTAGCC 1088 Query 350297 TATGGTGCTGCTGTTCAGGC 350316 |||||||| ||||||||||| Sbjct 1087 TATGGTGCAGCTGTTCAGGC 1068 Score = 104 bits (114), Expect = 7e-17 Identities = 127/173 (73%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||| || ||||||||||| | || || ||| || || || || || ||| Sbjct 1984 ACAGCTGCTGCCATTGCATATGGATTGGACAA---GAGAGAGGGTGAGAAGAACATCCTT 1928 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | ||||| | |||||||| ||||||||||| || || || ||| |||| | ||| | Sbjct 1927 GTATTTGACCTGGGTGGTGGAACTTTTGATGTCTCCCTCCTGACAATTGACAATGGAGTC 1868 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||||||||| || || |||||| ||||| || ||||||||||| ||||| Sbjct 1867 TTTGAAGTTGTGGCTACCAATGGTGACACACACCTGGGTGGAGAAGACTTTGA 1815 Score = 102 bits (112), Expect = 2e-16 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 |||| ||||||||||||||||| || ||||| |||||||| ||||| |||||| | Sbjct 1066 CAGCCTGAACAGCTGCACCATAGGCTACAGCCTCATCTGGATTAATGCCACGAGAAGGCT 1125 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 | || ||||| || || ||| || | |||||| ||||| || || | ||| ||||||| Sbjct 1126 CCTTCCCATTGAAGAACTCTTTAACAAGTTGTTGTATTTTGGGGATGCGAGTAGAACCAC 1185 Query 183370 CGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTT 183429 | || | || | ||||| |||| | || | | | || |||| | |||||| | Sbjct 1186 CAACAAGAACAATCTCATCAATATCAGACTTCTTTAGGTCAGAGTCTTCCAGAACTTTCT 1245 Query 183430 CAACAGGGTCCATAGT 183445 |||||| | ||| || Sbjct 1246 GAACAGGCTTCATTGT 1261 >seq291425 Length=203 Score = 96.9 bits (106), Expect = 1e-14 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || ||||| || || || || || ||||| | || ||||| ||| Sbjct 176 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCGTCT 117 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | |||||||| || ||||| || || || ||| Sbjct 116 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCC 57 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGT 140698 || || || || || || || ||||| | ||| || ||||| || || || Sbjct 56 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGAGT 4 >seq311310 Length=349 Score = 91.5 bits (100), Expect = 4e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 349601 GTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACA 349660 || ||| |||||||| ||||||| |||||||| || |||||||| |||||| || ||| Sbjct 136 GTTACTCATGCTGTTGTTACTGTGCCAGCCTACTTCAATGATGCTCAGCGTCAGGCTACA 77 Query 349661 AAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713 ||||||||||| | ||||| || || || || | | || |||||||| || Sbjct 76 AAAGATGCTGGTACAATTGCTGGATTGAACGTGATGCGCATTATTAATGAGCC 24 >seq456222 Length=339 Score = 87.8 bits (96), Expect = 5e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 223722 CCTCATCTCTTGATATTAA-TTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCTTT 223780 |||||||||| | || ||| |||||| ||||| || ||||||||||||| || ||||| Sbjct 53 CCTCATCTCT-GCTAATAAGTTCATTGGAAAAAGTCAATCCAGGCATTAGGCCCCTCTTC 111 Query 223781 TTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAAAC 223840 |||| ||||||||| || ||| | || ||||| || || ||||| || |||||| Sbjct 112 TTCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAG 171 Query 223841 GCTAC 223845 || || Sbjct 172 GCAAC 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1496383839344394