Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq456222 86.0 7e-12 seq372094 84.2 2e-11 seq525831 82.4 8e-11 >seq456222 Length=339 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | | |||||||| || || | ||||||| Sbjct 55 TCATCTCTGCTAATAAGTTCATTGGAAAAAGTCAATCCAGGCATTAGGCCCCTCTTCTTC 114 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||||| || ||| || ||||| |||||||||||||| || |||||||| Sbjct 115 AGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 174 Query 74892 AC 74893 || Sbjct 175 AC 176 >seq372094 Length=380 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 ||||||||| || |||| ||| ||||||||||| |||||| ||| | ||||| || || Sbjct 60 AGTGAAAATATAGCGAGGGCTGGCAGCATCCTTTCCACCATGAAGCCTGGTACCAAACTG 119 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| | || | | || || | ||||| || || ||||| |||||||||||||| Sbjct 120 ACCAATAGGTTGTAGAAGATTAACATTGTTACTTCCAACGAAGTTCTGAGCCAAGTTGAC 179 Query 117424 AATCGT 117429 ||| || Sbjct 180 AATGGT 185 >seq525831 Length=1740 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||||||||| | ||| || | ||||| ||||| ||||| || |||||||| Sbjct 12 GTAAAGATGTATCGAGGGCTCGCAGAGTCCTTCCCACCGTGCAGCCTTGTGCCAAACTGG 71 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGC 152138 || ||||| || |||||||||||||| |||||| || |||||||| Sbjct 72 CCGATGGGCTGCAGCAGGTTGAGGTTGTTACTGCCCACAAAGTTCTGAGC 121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540567339280400