Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq291424 159 8e-34 seq331414 105 2e-17 seq971994 102 2e-16 seq912110 87.8 4e-12 >seq291424 Length=270 Score = 159 bits (176), Expect = 8e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| ||||||||||| || || |||| ||||| || | || ||| | ||| || Sbjct 220 CAGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCGTC 161 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||||||||| || | || || ||||| ||||| || |||||||| Sbjct 160 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTC 101 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| || ||| ||||||||||| || |||||| || || ||||| || Sbjct 100 CTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCCAAGGTGATGGT 41 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||| || || | ||| | ||||| || Sbjct 40 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGTT 5 >seq331414 Length=254 Score = 105 bits (116), Expect = 2e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || || || || ||||| || || |||| ||||| || | || || | ||| || Sbjct 156 CAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 97 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||||||||| || | || || || || ||||| ||||| ||||| Sbjct 96 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTGTC 37 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 |||||||| ||||||| || |||||||| Sbjct 36 CTGGATCTTGGCCTTCACATTCTCAATGGTGTC 4 >seq971994 Length=4190 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| | || ||||| || | || || |||||||| || || || |||||| | ||||| Sbjct 1 CAAATCTATAACGTAATCGTAACAGCCCATGCCTTCGTCATAATCTTCTTTATAGTTATA 60 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || ||||||| || || |||||||||||||| || || | || ||||| || || || Sbjct 61 CCTATTATGATCGGAGGCTTCGGAAATTGATTAGTCCCACTTATAATTGGCGCCCCAGAC 120 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 || || || ||| | | || || ||||| || ||| | || || || ||||| |||| Sbjct 121 ATAGCATTCCCACGCATAAATAACATAAGCTTCTGACTCCTCCCTCCCTCCTTCCTTCT 179 >seq912110 Length=664 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 4477 TGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCTTGT 4536 || ||||||||||| || || ||||| || || || |||||||| |||||||| || || Sbjct 131 TGCCCATCAGTAATGGAAATGACATTGGTTGGAATGTAAGCAGACACATCACCAGCCTGA 72 Query 4537 GTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAA 4577 ||||| | ||||| || ||||| || || ||||| ||||| Sbjct 71 GTTTCAATGACAGGCAAAGCTGTCAGAGAGCCACCTCCAAA 31 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177679745126612