Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq456222 129 5e-25 seq456224 111 1e-19 seq624763 107 2e-18 seq624761 89.7 4e-13 >seq456222 Length=339 Score = 129 bits (142), Expect = 5e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 4558 CACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTA 4617 |||||| || | || ||||||||||| ||||| || ||||| || ||||| ||||||| Sbjct 41 CACAATACATTACCTCATCTCTGCTAATAAGTTCATTGGAAAAAGTCAATCCAGGCATTA 100 Query 4618 AACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTA 4677 || ||||| || |||||||||||||| |||||||| || |||||||| |||||||| | Sbjct 101 GGCCCCTCTTCTTCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAA 160 Query 4678 CGGCGGCAAACGCTAC 4693 | || ||||| || || Sbjct 161 CTGCAGCAAAGGCAAC 176 >seq456224 Length=2743 Score = 111 bits (122), Expect = 1e-19 Identities = 101/126 (80%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 4926 CTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATG 4984 |||||| || |||||||| ||||| || || |||||||||||||| || || | |||||| Sbjct 2344 CTTTCTCACCAAGTTTTCATTTACAATCCCATCACTGGCTGCAAAGAAGGCGAGAACATG 2403 Query 4985 AGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAA 5044 ||| |||||||||| ||| || || || || || |||||||| || | || || | ||| Sbjct 2404 AGAGATAAAGTACTTTTCATCTGGTTTTAGCTTGTTCCAGTGAGGAAGGTCCTTTGATAA 2463 Query 5045 ATCAAC 5050 |||||| Sbjct 2464 ATCAAC 2469 >seq624763 Length=1955 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||| || || || || |||||||| || | ||| |||||||| ||||| || || Sbjct 994 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTC 935 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||| || | ||||| || ||||||||||| || ||||| || || ||||| ||| Sbjct 934 AGCCAAAAAATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGCT 875 Query 4692 ACTA 4695 |||| Sbjct 874 ACTA 871 >seq624761 Length=539 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| ||| || ||||| || || || || |||||||| |||||||||||||| || Sbjct 372 GGATCTTTAATGTACGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATG 313 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 |||||||| || || || || || | |||||||| | ||| ||||| Sbjct 312 GCAATCTGGAAGCCATAGAAACAACGTGCTTCTGTGATTTGCACTTC 266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421990674085334