Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq863563 152 7e-32 seq310436 134 2e-26 seq863562 91.5 2e-13 >seq863563 Length=2837 Score = 152 bits (168), Expect = 7e-32 Identities = 179/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| || ||||| || || ||||| ||| ||| |||||||| || ||||||| Sbjct 350 ATGAGTCTTGTAGTCTGAAATAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAAG 291 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 ||||| || || ||||||||||| || ||||| || || || |||||||| || || || Sbjct 290 ACATCACAGACTCTGTTGTGTTCTCTTAGCCATATCGTTGCATACATCATTAGGCCTGGG 231 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| |||||| |||| || || |||| | ||| || || || || | ||||| Sbjct 230 ACCAAGCCAAACACCTCCTGCCCAACAGAAAACTGCAGGTGCTCAGGAACGTGAGGAGGG 171 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | | || ||| || || | || ||||||||||| || ||||||||| Sbjct 170 TAGATCATCTCTGCTTGAGTGTCCTTTACTGTTGGTGGATACATTTCTCCATCAATCATC 111 Query 9484 TG 9485 || Sbjct 110 TG 109 Score = 147 bits (162), Expect = 3e-30 Identities = 227/320 (71%), Gaps = 3/320 (1%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || || ||| | |||| || ||| | | || Sbjct 2369 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 2310 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | |||||||| | ||| || |||||||| |||||||||||| | |||| Sbjct 2309 TATTGATTATTTCAAACCCCACTTTTCCACCAAAGGTGCTTGGCTTCCAGTACTCAGGGG 2250 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||| || || |||| || ||||| || |||||||| || || | || | || Sbjct 2249 AGCATATTGTATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCGCCAATTTCTACCATTG 2190 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAGCTCC 8527 | ||||| |||||||| || | |||||||| || ||||| || | ||||| ||| Sbjct 2189 TTTCACCAAAGATGGCACCTGGTCTAGGCTTTTCTAC-AAGAAGGCCTGGATACAGTTCC 2131 Query 8528 ACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT- 8586 | ||| || | |||||||||||| | ||||| ||||| || || ||||||||||| Sbjct 2130 ATAGCATCTATGTCTCCGTAAAGCTCTTCTAGTTCAGCAGCCATTTCTTTTTCTCCTGTA 2071 Query 8587 TTTATTAATAAAAAATAACA 8606 |||||||| || || |||| Sbjct 2070 ATTATTAATGAATAAGAACA 2051 >seq310436 Length=623 Score = 134 bits (148), Expect = 2e-26 Identities = 215/309 (70%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336 |||| || || |||||||| | |||||||| ||| |||||| || || || || Sbjct 537 CATCCGGCACACGGAACGCCACGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCT 478 Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396 | | ||| ||||||||||| |||| || |||| || ||||| |||||||||| Sbjct 477 CCAGTGATGCTGTCTTGACGATCTCGAAGCCGGTTGCTCCACCAAAGGTACTGGGCTTCC 418 Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456 ||||| | |||||||||||| ||| | | || || || || || || ||||| || | Sbjct 417 AGTACTCTGGGGAGCAGATGGGATTCCCAAGAAGTCCCTTCAGTGAAAATGGAGCGCCAA 358 Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516 ||| | ||||| || || |||||| | ||||| |||| || || | || || || | Sbjct 357 TCTCCACCATGCTTTCCCCAAAGATGCCATTGGGTTGGGGTTTCTCAAGCAGCAACCCTG 298 Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCT 8576 || | ||||| ||| || | |||||| || || || || || || || ||| || Sbjct 297 GATAAAACTCCAGAGCATCAATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCTTCTTCT 238 Query 8577 TTTCTCCTG 8585 ||||||| Sbjct 237 CCTCTCCTG 229 >seq863562 Length=1711 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969 |||||| || || | || |||||||| || || || || || || | |||| ||| Sbjct 164 ACCTTTAACACCCATCGGTGTTGGACAGTCATGTCCTACTGGTGGAAGGCTTCTTGTGTA 105 Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029 |||||| |||||||| ||||||||||| | ||| | ||||| ||||||| | || Sbjct 104 ATAGGAAAGATTGGAATAAGCTTCCCAGGATTTGTAATTATAGTCACTGTTGTATGTTGG 45 Query 10030 AGGGCTGTCAATCAAATCGGATCTACCTGA 10059 |||||||||||||| | ||||| |||| Sbjct 44 TGGGCTGTCAATCAAGTGTGATCTCGCTGA 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708166764801920