Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq643 140 3e-28 seq617 118 9e-22 >seq643 Length=9611585 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| ||||| || ||||| ||||| | |||||| | | || |||||||| ||||| Sbjct 8386007 GTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTGCCA 8385948 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| |||| || ||||||||||| ||| | ||| |||||||| |||||| ||| Sbjct 8385947 GCAAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 8385888 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| |||||||| |||||| ||||| ||| ||||||||||| || | || Sbjct 8385887 ACATTCTCGATAGTATCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 8385828 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 8385827 TTGACAAAGATCTGCAT 8385811 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||| | || | ||||| || || || ||||| ||||| | Sbjct 8385353 CCACCTCTCAGACGCAGCACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAG 8385294 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||||||||| ||||| || |||| || |||||||| || || Sbjct 8385293 AGGGTACGACCATCCTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGA 8385234 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| ||||| | | | ||||||| |||||| | Sbjct 8385233 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCACTGGGCTCAACT 8385174 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || | || |||||||| || ||||| Sbjct 8385173 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8385127 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||| | |||| ||| |||||||| || ||||| ||||| | Sbjct 8385581 CCACCTCTCAGACGCAGCACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAG 8385522 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || |||||||| ||||| ||| | || || ||||||||||| || Sbjct 8385521 AGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 8385462 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| ||||| | ||| || |||| |||||| Sbjct 8385461 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACC 8385402 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || | || |||||||| || ||||| Sbjct 8385401 TCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8385355 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||| | || | ||||| ||||| || ||||| ||||| | Sbjct 8385125 CCACCTCTCAGACGCAGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 8385066 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||||||| ||||| || |||| || |||||||| || || Sbjct 8385065 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGA 8385006 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| ||||| | | | ||||||| |||||| Sbjct 8385005 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTATCACTGGGCTCAACC 8384946 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 || | ||| ||||||||||| || | || || ||||| || ||||| |||| Sbjct 8384945 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTGA 8384894 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||| | || | ||||| || || || ||||| ||||| | | Sbjct 8385809 CCACCTCTCAGACGCAGCACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 8385750 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||||||| || || ||| | || || ||||||||||| ||| Sbjct 8385749 AGGGTACGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 8385690 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| ||||| | ||| || |||| |||||| | Sbjct 8385689 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACT 8385630 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || | || || || || || ||||| Sbjct 8385629 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 8385583 >seq617 Length=9440908 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | |||| |||||||||||| || ||||| ||||| | |||||| | | || Sbjct 4534518 AGCACTAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 4534577 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || || | || || |||||||| || ||| | |||||||||||| Sbjct 4534578 TCCAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 4534637 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| || || | | | || |||| |||||| || | ||| |||||| Sbjct 4534638 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 4534697 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || || || | |||||||| || || |||||||| Sbjct 4534698 TTTCCAGTCAGGGTTTTGACGAAGATCTGCATTTT 4534732 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | || || | |||| || || || || || ||||||||||| | | Sbjct 4534275 CCACCTCTCAGACGCAGGACAAGGTGCAGGGTAGATTCTTTCTGGATGTTATAGTCGGAC 4534334 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||||||| || || ||| | || || ||||| ||||| || Sbjct 4534335 AGGGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGTTGGTCGGGTGGA 4534394 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | | | || |||| |||||| | Sbjct 4534395 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACT 4534454 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || | || ||||||||||| ||||| Sbjct 4534455 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAATATCTGCAT 4534501 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || | ||| | || || | |||| ||||||||||| || ||||| ||||| Sbjct 4533815 GTTACCACCCCTCAGGCGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 4533874 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | |||||| | | || |||||||| || || ||| | || || ||||||||||| Sbjct 4533875 AGACAGGGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGG 4533934 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | ||| |||||||| |||||| || || | | | || |||| |||||| Sbjct 4533935 AGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTC 4533994 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || |||||||| || ||||| Sbjct 4533995 GACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 4534045 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| ||||||||||| || ||||| ||||| | || || | | || |||||||| Sbjct 4534071 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAATGTGCGACCATCTTCCAGCTGC 4534130 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 || || ||| | || || |||||||| || ||| | |||||||||||| |||||| Sbjct 4534131 TTCCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG 4534190 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 ||| || | | | || |||| |||||| || | ||| ||||||||||| || Sbjct 4534191 GCTTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTC 4534250 Query 21153 AACGTTTTGACAAATATTTGCAT 21175 | || |||||||| || ||||| Sbjct 4534251 AGGGTCTTGACAAAGATCTGCAT 4534273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422180384660540