Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq617 149 6e-31 seq643 125 7e-24 seq24 102 8e-17 seq2 87.8 2e-12 >seq617 Length=9440908 Score = 149 bits (164), Expect = 6e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||||||||| || ||||| ||||| || || || || ||||||||| | || ||||| Sbjct 4534734 GAAAAATGCAGATCTTCGTCAAAACCCTGACTGGAAAGACCATCACCCTTGAGGTCGAGC 4534675 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 ||| |||| | | | | |||||| ||| || | ||||| || ||||| ||| | | Sbjct 4534674 CCAGTGACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAG 4534615 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| | || |||| ||| || || |||||||| || | || ||||| |||| Sbjct 4534614 ATCAGCAGAGGCTGATCTTCGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACT 4534555 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||||| |||| ||||| ||||| ||||| | || || || Sbjct 4534554 ACAACATCCAGAAGGAGTCCACTCTGCACTTAGTGCTGCGCCTCAGAGGTGG 4534503 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || ||||| ||| Sbjct 4534045 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 4533986 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| || || | ||||| |||||||| || | |||||| Sbjct 4533985 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAG 4533926 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || || |||||||| || | || ||||| ||||||||| Sbjct 4533925 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 4533866 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| ||||| || || ||||| ||||||| || Sbjct 4533865 ATCCAGAAGGAGTCCACCCTGCACCTTGTCCTGCGCCTGAGGGGTGG 4533819 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || ||| Sbjct 4534273 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 4534214 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||| | || || | ||||| || ||||| ||| | || ||| Sbjct 4534213 GACACCATTGAAAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 4534154 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || || |||||||| || | ||||| | |||||||||| Sbjct 4534153 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGCACATTGTCCGACTACAAC 4534094 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| ||||| || || ||||| ||||||| || Sbjct 4534093 ATCCAGAAGGAGTCCACCCTGCACCTTGTCCTGCGCCTGAGGGGAGG 4534047 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || || || || || ||||| ||||||||| | || || || ||| Sbjct 4534501 ATGCAGATATTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 4534442 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || ||||| || | ||||| Sbjct 4534441 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCACCCGACCAA 4534382 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || || |||||||| || | || ||||| |||||| ||| Sbjct 4534381 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCCGACTATAAC 4534322 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| || | || ||||| || || |||| |||| || || Sbjct 4534321 ATCCAGAAAGAATCTACCCTGCACCTTGTCCTGCGTCTGAGAGGTGG 4534275 >seq643 Length=9611585 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| |||| || || ||| Sbjct 8385355 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTTGAGCCCAGT 8385414 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| || | ||||| Sbjct 8385415 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCA 8385473 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||| ||| |||||||| Sbjct 8385474 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTCTCTGACTACAA 8385533 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || ||||| || ||| |||| |||| || || Sbjct 8385534 CATCCAGAAGGAGTCAACTCTGCACCTTGTGCTGCGTCTGAGAGGTGG 8385581 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || ||| Sbjct 8385811 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 8385870 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| || || | ||||| |||||||| ||| | |||||| Sbjct 8385871 GATACTATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 8385930 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || || | || ||||| |||||||| || | |||||||| |||||||||| Sbjct 8385931 CAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 8385990 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| |||| || || || ||| ||||| | ||||| ||| Sbjct 8385991 ATCCAGAAGGAATCCACCCTCCACCTCGTGCTGCGCCTCAGGGGGGGC 8386038 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| ||||||||| | || || || || Sbjct 8384896 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 8384955 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | ||| | |||| || || | ||||| || ||||| || | || Sbjct 8384956 AGTGATACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGAT 8385015 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || || | ||| ||||| |||||||| || | ||||||||| |||||| Sbjct 8385016 CAGCAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGACTAC 8385075 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||| |||| || || || ||| |||| |||| || || Sbjct 8385076 AACATCCAGAAGGAATCCACCCTCCACCTTGTGCTGCGTCTGAGAGGTGG 8385125 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| Sbjct 8385583 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 8385642 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || || || ||| | ||||| Sbjct 8385643 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCAGACCA 8385701 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || || |||||||| || | || ||||| |||||||| Sbjct 8385702 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAA 8385761 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| || |||| || || || ||| |||| |||| || || Sbjct 8385762 CATCCAGAAAGAATCCACCCTCCACCTTGTGCTGCGTCTGAGAGGTGG 8385809 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || ||| Sbjct 8385127 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 8385186 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| || || | ||||| || ||||| || | || || Sbjct 8385187 GATACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCA 8385245 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || || | ||| ||||| |||||||| || | || |||||| |||||||| Sbjct 8385246 GCAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAGGATGGTCGTACCCTCTCTGACTACAA 8385305 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| || |||| || || || ||| |||| |||| || || Sbjct 8385306 CATCCAGAAAGAATCCACCCTCCACCTTGTGCTGCGTCTGAGAGGTGG 8385353 >seq24 Length=20913710 Score = 102 bits (112), Expect = 8e-17 Identities = 95/114 (83%), Gaps = 5/114 (4%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||| |||||||||||||||||| ||| || ||||| || || ||| || || Sbjct 12112639 GAGCCGCTGCTG-GCGAGAACCCCCGCCGGT-CGTCATCTTCCC-ATCCAGTACACGAAC 12112583 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| ||||||||||| || |||| ||| | ||||||||| Sbjct 12112582 ATCTGGCAGATGTACAAGAAGGCCGAGGC-TCCTTCT-GACGGCGGAGGAGGTG 12112531 >seq2 Length=61069995 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||||||||| || || || ||||||| Sbjct 20733618 TGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 20733677 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || ||||||||| ||| || || || ||| | Sbjct 20733678 GGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAG 20733737 Query 117162 ACGAGG 117167 | |||| Sbjct 20733738 ATGAGG 20733743 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||||||||| || || || ||||||| Sbjct 20738203 TGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 20738262 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || ||||||||| ||| || || || ||| | Sbjct 20738263 GGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAG 20738322 Query 117162 ACGAGG 117167 | |||| Sbjct 20738323 ATGAGG 20738328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515120567724400