Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq617 113 4e-20 seq643 107 2e-18 >seq617 Length=9440908 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| || || || || ||| || ||||| || ||| Sbjct 4533849 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTCCCA 4533908 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || | |||||| |||||||| |||||||||||||| || || || Sbjct 4533909 GCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 4533968 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | |||||| || ||||||||| | ||| | || ||||| ||||| || Sbjct 4533969 ACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 4534028 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 4534029 TTGACAAAGATCTGCAT 4534045 >seq643 Length=9611585 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||| | ||||| || || || || || |||||||| || | ||||| ||| Sbjct 8385111 CAGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATC 8385052 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || |||||| | || || | ||||||||||||||| ||||| |||||||| Sbjct 8385051 TTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 8384992 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | ||| | ||| || || ||| ||||| | ||| | || Sbjct 8384991 CTGGATCTTGGCCTTCACATTTTCAATGGTATCACTGGGCTCAACCTCAAGGGTGATGGT 8384932 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| || || ||||| ||||||||| Sbjct 8384931 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 8384898 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||| | ||||| || || ||||| || |||||||| || | || || ||| Sbjct 8385339 CAGCACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTACGACCATC 8385280 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || |||||| | || || | ||||||||||||||| ||||| |||||||| Sbjct 8385279 CTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 8385220 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | ||| || || ||| || || | ||| | || Sbjct 8385219 CTGGATCTTGGCCTTCACGTTCTCAATGGTATCACTGGGCTCAACTTCCAGGGTGATGGT 8385160 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || ||||| |||||||| Sbjct 8385159 CTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8385127 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||| | ||||| || || || || || |||||||| ||| || ||||| ||| Sbjct 8386023 CAGCACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATC 8385964 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || ||||| | || || | |||||| || || || |||||||||||||| Sbjct 8385963 TTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 8385904 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| || || || ||| || || | ||| | || Sbjct 8385903 CTGGATCTTGGCCTTCACATTCTCGATAGTATCACTGGGCTCAACTTCCAGGGTGATGGT 8385844 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || ||||| |||||||| Sbjct 8385843 CTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8385811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433749424877980