Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq617 109 6e-19 seq6147 98.7 1e-15 seq758 98.7 1e-15 seq526 96.9 4e-15 >seq617 Length=9440908 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||| |||||| || || ||||| |||| ||| || || | || || |||||| Sbjct 4533843 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGC 4533902 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || ||||| || || || | ||||||||||| || | || |||||||||| ||| || Sbjct 4533903 TTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTG 4533962 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 |||| | | | ||||| || | || || || | |||||||| ||||| || Sbjct 4533963 GCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 4534022 Query 43161 AGCGTCTTTACAAAGATTTGCAT 43183 || ||||| |||||||| ||||| Sbjct 4534023 AGGGTCTTGACAAAGATCTGCAT 4534045 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4538370 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4538429 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 4538430 TACTAACGAGGA 4538441 >seq6147 Length=8391 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 8172 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 8231 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 8232 TACTAACGAGGA 8243 >seq758 Length=45430612 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 21780451 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 21780392 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 21780391 TACTAACGAGGA 21780380 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 22736350 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 22736409 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 22736410 TACTAACGAGGA 22736421 Score = 86.0 bits (94), Expect = 7e-12 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 60068 CCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC-CACTAT 60126 || || | ||||||||||||| ||||||||||||||||||||| |||||||| |||||| Sbjct 21780598 CCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG-GATACTCACACACTAT 21780656 Query 60127 ACTACCGAGGA 60137 |||| |||||| Sbjct 21780657 ACTAACGAGGA 21780667 >seq526 Length=10987953 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 3135755 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 3135814 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 3135815 ATACTAACGAGGA 3135827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571708132668200