Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2 105 6e-18 seq24 89.7 5e-13 >seq2 Length=61069995 Score = 105 bits (116), Expect = 6e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 ||||||| ||| |||| || ||||| || || | | || |||||| | | || Sbjct 20744894 AAAAATCTGCATCCAGAGTGAAGACATTGTCCATTGTTTCTGCCATAACAGCAAAACGTT 20744835 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 ||||||| ||| | ||| ||||||||||||||||||||||| | |||||||| |||| Sbjct 20744834 GATATTCCGAAACGCGCTTCTCAAAGAAATTTGTTTTTCCTTCCAGAGAAATATTCTCCA 20744775 Query 16008 TAAAATCAAAAGGATTTTTTG 16028 | |||||||||||||||| || Sbjct 20744774 TGAAATCAAAAGGATTTTCTG 20744754 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || || || || || || ||||| || || | || || Sbjct 20733741 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 20733682 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||||||||| ||||| ||||| |||||||| || ||||| ||||| ||||| ||| Sbjct 20733681 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 20733622 Query 16379 ACCAATCGCTCACC 16392 |||| || |||||| Sbjct 20733621 ACCACTCTCTCACC 20733608 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || || || || || || ||||| || || | || || Sbjct 20738326 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 20738267 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||||||||| ||||| ||||| |||||||| || ||||| ||||| ||||| ||| Sbjct 20738266 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 20738207 Query 16379 ACCAATCGCTCACC 16392 |||| || |||||| Sbjct 20738206 ACCACTCTCTCACC 20738193 >seq24 Length=20913710 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || ||||| || | || || ||||| || || || ||||||| ||||| ||| || Sbjct 12109533 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 12109592 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||| || | ||||| || ||||||||||| || ||||| || || ||||| ||| Sbjct 12109593 AGCCAAAAAATTGATGCAAACGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGGCA 12109652 Query 16379 AC 16380 || Sbjct 12109653 AC 12109654 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985 |||||||| ||| ||| | |||||||||| |||| ||| ||||||||||| || || Sbjct 12108306 TTTGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTG 12108365 Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023 ||||| || || || || ||||| || ||||||||||| Sbjct 12108366 CCTTCCAAAGATATGTTCTCCATGAAGTCAAAAGGATT 12108403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462423457859000