Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq771 376 2e-99 >seq771 Length=4601986 Score = 376 bits (416), Expect = 2e-99 Identities = 720/1050 (69%), Gaps = 16/1050 (2%) Strand=Plus/Minus Query 107582 CAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAAC 107641 ||||||||| ||| ||| | | || | || || || | | | ||||| ||||| || Sbjct 3580977 CAACCTGGAGGTGGCGAACAGGAGGGCTCCGCTGACGCCCGGCCACTACCTGAACATGAC 3580918 Query 107642 CAGAGACTGTGAGCGC-TTCA---AGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTA 107697 || ||||| ||||| |||| || ||| || ||||| ||||||| ||||| Sbjct 3580917 GAGGGACTGC-AGCGCCTTCAGGCAGACCC---GGCGCTTCATCGAGTTCCCGCTGAGCC 3580862 Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACT 107757 | || ||| || |||||||| |||||||| ||||| |||| | || || || | | Sbjct 3580861 AGGAGGAGGCGGAGTTCCCCATCGCCTACTCCATGGTCATCCACAACAAAATCGAGATGT 3580802 Query 107758 TT-GAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGAT 107816 || || ||||| ||||| || | || ||||| |||||| | ||||| || |||||||| Sbjct 3580801 TTCGAGCGGCTCCTGCGCTCCCTCTACGCCCCCCAGAACGTCTACTGCGTGCACGTGGAC 3580742 Query 107817 GTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAAT 107876 |||||||| | | ||| | ||||| || |||||| |||||||||||| Sbjct 3580741 AGCAAGTCCCCGGCCGCCTTCCAGGAGGCCGTGCGGGCCATCGCAGGCTGCTTCCCCAAC 3580682 Query 107877 GTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCT 107936 |||||| ||||||| ||| ||||| || |||||||||||| | |||| || Sbjct 3580681 GTCTTCGTGGCCAGCCGCCTGGAAAACGTGGTCTACGCCTCCTGGTCCCGGCTGCAGGCC 3580622 Query 107937 GACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAAT 107996 ||||| ||||| ||| ||| |||| | |||| | ||||| ||| |||| | || || Sbjct 3580621 GACCTCAACTGCATGCGGGACCTGCTGCGGAGCCCCGTGCCCTGGCGGTACCTGCTCAAC 3580562 Query 107997 ACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGT-CCTGGCCCTCAAGAT 108055 || ||||| || ||||||||||| |||||||| |||||||| || | ||||| ||| | Sbjct 3580561 ACCTGCGGCACCGACTTCCCCATCAAGACCAACGCCGAGATCGTGCGCCGCCCTGAAGGT 3580502 Query 108056 GTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTG 108115 | || |||| |||||| ||||||| ||| || || | | |||| ||||| Sbjct 3580501 GCTGCAGGGCCGGAACAGCCTGGAGTCGGAGAAGCCCTCGGCGGCCAAGCGGGCGCGCTG 3580442 Query 108116 GAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCA-AGATGAAGGACCCTC 108174 | | | || | | |||||| | | | | || ||| || ||| |||| || | Sbjct 3580441 GCAGTTCCACCACGAGGTGGGGAAGGCCATCTCCCGGACCGACATAGA-GAAGCTGCCGC 3580383 Query 108175 CCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTG 108234 | || || | ||||||||||| || || || || | |||| | || | ||| | Sbjct 3580382 CGCCCCTCAACTGCCCCATGTTCACGGGCAACGCGTACATCGTGGTGACACGGGGCTTCG 3580323 Query 108235 TCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCT 108294 | | || |||| || ||||| | | || | | | || ||| ||| ||||||| Sbjct 3580322 TGCGGCACCTCTTCGAGAACCCCACGGCACAGAAGTTCCTCGAGTGGTCCAAGGACACCT 3580263 Query 108295 ATAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTGCTCCGTGGATGCCTGGCTC 108352 | ||||| ||||| ||| | ||||||||||| | || || ||| | |||| || | Sbjct 3580262 ACAGCCCTGACGAGCACGTGTGGGCCACCCTGACCCGCATG--CCGGGCGTGCCGGGGGC 3580205 Query 108353 TGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAA 108412 || || | || ||||| || | || ||||||| ||| | || | || ||||| Sbjct 3580204 CGTGCCCCACAACGACAAGTTCCAGCTGTCGGACATGAACGCCCTTCCCCGCCTGGTCAA 3580145 Query 108413 GTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAAT 108472 |||| |||||| ||||| || ||||| ||| ||||| || | |||||| | || Sbjct 3580144 GTGGGAGTACCTGGAGGGCGACCCCAGCAAGGGCGCGCCGTACCCGCCCTGCACCGGCCG 3580085 Query 108473 CCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCA 108532 ||| | | | || ||||||| |||||||| || ||| || |||||| || ||| | || Sbjct 3580084 CCACCAGCGCTCCGTCTGCATCTACGGGGCGGGCGACGTGCCCTGGATGCTGCAGCAGCA 3580025 Query 108533 TCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGA 108592 || |||||||| |||||||| ||||| |||||| ||| || | | | |||| | || Sbjct 3580024 CCATCTCTTGGCCAACAAGTTCGACCCCGAGGTGGACGATGCCGCCATCCTGTGCCTCGA 3579965 Query 108593 AGAGTACCTACGTCATAAGGCCATCTATGG 108622 ||| |||| || || | |||| |||| || Sbjct 3579964 GGAGCACCTGCGCCACAGGGCCCTCTACGG 3579935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348203795084310