Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq758 120 4e-22 seq2 120 4e-22 seq24 114 2e-20 seq41 89.7 7e-13 >seq758 Length=45430612 Score = 120 bits (132), Expect = 4e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287 ||||| |||||| || ||||| | | | ||| || ||||||||||||||||| ||| Sbjct 34564226 TATTTTTTATTAAATGTTTCCAGTAAACGCAGCAGGTGTAAGAACAGATTGATGATGTCC 34564167 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 ||||||| |||||| | || | | || |||||||| || | || || || || || Sbjct 34564166 AAGTAGAGATTGATTGCAGCCAGTATGTACTCTTCAGGGGACAATTTGTGCATCAGCAAG 34564107 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407 || |||||||| ||||| ||||| ||||| | ||| || ||| ||||| | |||| | Sbjct 34564106 TGAGTGTCATAAATAATAAATCCACAGAACAGAAGAGCTCCAGCAGCAGCAAACACCAAC 34564047 Query 9408 TCCACTGTTTCACT 9421 || | ||| ||||| Sbjct 34564046 TCTATTGTCTCACT 34564033 Score = 105 bits (116), Expect = 9e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 9456 AAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGT 9515 |||||| ||| | |||| | |||||||||| || ||||| ||||||||||| || Sbjct 34562898 AAAATCATCAATATGACAACATACCCTGCTCCAAACTTGCTGAAGTCTCTCTTTGACTGC 34562839 Query 9516 AGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACG 9575 | |||||||||||||| ||||||| || |||||||| || || || ||||||| ||| Sbjct 34562838 AAAGTATATGCAGTCAACCCAAGAAATACAGCAGTAGTAAGAATAAAGGCTTGCAAGACG 34562779 Query 9576 ACATGCACATCATAGAAAGTAAC 9598 | ||||| |||||| |||| Sbjct 34562778 ATGGAGACATCGTAGAAACTAAC 34562756 >seq2 Length=61069995 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 20733743 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 20733684 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 20733683 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 20733624 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 20733623 CAACCACTCTCTCACC 20733608 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 20738328 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 20738269 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 20738268 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 20738209 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 20738208 CAACCACTCTCTCACC 20738193 >seq24 Length=20913710 Score = 114 bits (126), Expect = 2e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 12109531 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 12109590 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| || || ||||||| Sbjct 12109591 TCAGCCAAAAAATTGATGCAAACGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 12109650 Query 36300 CAA 36302 ||| Sbjct 12109651 CAA 12109653 >seq41 Length=584612 Score = 89.7 bits (98), Expect = 7e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 66059 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATG 66118 ||| |||||||| ||||||||||| ||||| || || | || | |||||||| ||| || Sbjct 562703 CACCCGTTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGATCTCTGGCTCTCTG 562644 Query 66119 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 || || || || || ||||| || || || || ||| | | || || |||||||| Sbjct 562643 CTCTTCTTTCCCAGTGTTCTTCTTCAGGTCCAGAAACTCAAAGATGTCCAGGTGCCACGG 562584 Query 66179 TTCCAAGTATATGGCCATAACTCCAGG 66205 |||| ||| ||||| | | | ||||| Sbjct 562583 CTCCAGGTAGATGGCAAAAGCCCCAGG 562557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658046801044600