Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq13889 89.7 8e-13 seq41 89.7 8e-13 seq2 87.8 3e-12 >seq13889 Length=1787 Score = 89.7 bits (98), Expect = 8e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 || ||| | |||||| | | | ||| ||||||||| || || ||||| ||||||||| Sbjct 671 CTCTGGTACGCCATCATCGAGTCCCAGACAGAGACTGGCACCCCCTACATGCTCTACAAG 730 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 || || || | || |||||||| | || |||||||||||||| || ||| ||| Sbjct 731 GACTCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAGTGCAGCAACCTG 790 Query 97299 TGCACGGAAATTGTAGAGTACGCC 97322 ||||| || || || |||||| || Sbjct 791 TGCACCGAGATCGTGGAGTACACC 814 >seq41 Length=584612 Score = 89.7 bits (98), Expect = 8e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 || ||| | |||||| | | | ||| ||||||||| || || ||||| ||||||||| Sbjct 563764 CTCTGGTACGCCATCATCGAGTCCCAGACAGAGACTGGCACCCCCTACATGCTCTACAAG 563823 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 || || || | || |||||||| | || |||||||||||||| || ||| ||| Sbjct 563824 GACTCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAGTGCAGCAACCTG 563883 Query 97299 TGCACGGAAATTGTAGAGTACGCC 97322 ||||| || || || |||||| || Sbjct 563884 TGCACCGAGATCGTGGAGTACACC 563907 >seq2 Length=61069995 Score = 87.8 bits (96), Expect = 3e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 || ||| |||| || || || || || || |||||||||||||||||| ||||| || Sbjct 20733611 GAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCT 20733670 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 || |||||||| |||||| | || || ||||| |||||||| Sbjct 20733671 ATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGACTGAC 20733711 Score = 87.8 bits (96), Expect = 3e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 || ||| |||| || || || || || || |||||||||||||||||| ||||| || Sbjct 20738196 GAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCT 20738255 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 || |||||||| |||||| | || || ||||| |||||||| Sbjct 20738256 ATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGACTGAC 20738296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740917333479400