Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq2 111 1e-19 >seq2 Length=61069995 Score = 111 bits (122), Expect = 1e-19 Identities = 138/184 (75%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| |||||||| || | |||||||||||| || ||||| ||||| | || Sbjct 50377270 CATATCTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATACACTGGTCCCAAATC 50377211 Query 25833 TCCATCTTCCCTG-TGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 || || || ||| |||| ||| ||| |||||||| || || | || ||||| || | Sbjct 50377210 CCCCTCCTCTCTGGTGCTGAAA-CCCTGCTTATCCAGGAACTCACGTGACCCATTAGCAT 50377152 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 25951 |||| ||||| || || || | ||||||||||||| ||||| || || || || || | Sbjct 50377151 CCCAAATCTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAAC 50377094 Query 25952 ACAG 25955 |||| Sbjct 50377093 ACAG 50377090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340074112785495