Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq835 172 8e-38 seq495 113 6e-20 >seq835 Length=3194076 Score = 172 bits (190), Expect = 8e-38 Identities = 217/298 (73%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| || ||||| ||| | |||| || || | | ||| Sbjct 1702819 GGAAGGCAGTGAAGGGACAGCCCTTGACATTGTTGCAGATGAGCTTTTGCAAGGAGGCAG 1702878 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| ||| |||| ||||| | || |||||||||||||| |||||||| | |||| Sbjct 1702879 TGTTGATGATGTCAAAGCCCACTTTGCCACCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 1702938 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| | || |||| || || || ||||| ||||| || |||| ||| | ||| Sbjct 1702939 AGCAGATGGCATTGCCCATCAGTCCCTTCAGGGAGAACGGGGCTCCCATCTCCACCATGG 1702998 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || ||||||||||| || || ||||||||||||| | || | ||||| ||||| Sbjct 1702999 TTTCTCCGAAGATGGCACCTGGGCGTGGCTTTTCCACCAGAAGGCCTGGGTACAGCTCCA 1703058 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 || || |||||||| || || || || || || || ||||||||||||||||| Sbjct 1703059 TGGCATCAATGTCTCCATACAGCTCCTCCAGCTCAGCTGCCATTTCCTTTTCTCCTGT 1703116 Score = 129 bits (142), Expect = 8e-25 Identities = 179/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 || || | |||||| | ||||| || || || || ||||| ||| || || || || Sbjct 1704755 CCTATCAAGATGAGCCTGGTGGTTTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGCTCC 1704814 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 ||| | || || ||||| || | |||||| |||| |||||||| || ||||||||||| Sbjct 1704815 CGTCTGAGGACGTCGCAGACGCGGTTGTGCTCCCGCAGCCAGATCGTGGCGTACATCATC 1704874 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACT 9792 || || |||||||| || || |||| || || || | | |||| | || ||||| Sbjct 1704875 AGGCCTGGCACCAGCCCGAACACCTCCTGCCCCACCGAGAACCGCAGGTGCTCCGGCACG 1704934 Query 9793 TCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCG 9852 | ||| || || | ||| | ||||| || || |||| ||||| |||||||| || Sbjct 1704935 TGGGGGGGGTACAGCATCTCTGCCTGGGTGTCCTTCACCGTTGGGGGGTACATTTCTCCA 1704994 Query 9853 TCAATAATCTG 9863 ||||| ||||| Sbjct 1704995 TCAATCATCTG 1705005 >seq495 Length=12029152 Score = 113 bits (124), Expect = 6e-20 Identities = 175/250 (70%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 8691 ACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCC 8750 |||| |||| || |||||| || || || || || | || |||| || ||| Sbjct 1728595 ACGGGCACCTCTTCACGTTGAGGCACACGAGCTTCTTGAGCGACGCCGTCTTCACTATCT 1728654 Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| || | |||| || || || |||||||||||||| | |||||||||||| | Sbjct 1728655 CAAAGCCAGTGGCTCCACCAAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGAT 1728714 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | | | || || || |||||||| ||||| || | ||| | ||||| || || || | Sbjct 1728715 TTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCAATCTCCACCATGCTTTCCCCAAAAA 1728774 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 || | ||||| |||| || || | || || || | || ||||||| ||| || |||| Sbjct 1728775 TGCCATTGGGTTGGGGTTTCTCGAGCAGCAAGCCTGGATAAAACTCCAGAGCATCAATGT 1728834 Query 8931 CTCCGTAAAG 8940 ||||||| || Sbjct 1728835 CTCCGTACAG 1728844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708389161783600