Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq13889 116 3e-21 seq41 116 3e-21 seq617 109 5e-19 seq643 96.9 3e-15 >seq13889 Length=1787 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 145654 CTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCC 145713 ||||||| | | |||| | |||||||||| ||||| ||||| || |||||||| || Sbjct 826 CTCCTCGTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCC 767 Query 145714 CAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCC 145773 ||| || ||||| || || ||||||||||| | |||||||||||||||||| || ||| Sbjct 766 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCC 707 Query 145774 AGTCTCCACCTGCGTCTCCACGAT 145797 |||||| ||| | ||| | ||| Sbjct 706 AGTCTCTGTCTGGGACTCGATGAT 683 >seq41 Length=584612 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 145654 CTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCC 145713 ||||||| | | |||| | |||||||||| ||||| ||||| || |||||||| || Sbjct 563919 CTCCTCGTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCC 563860 Query 145714 CAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCC 145773 ||| || ||||| || || ||||||||||| | |||||||||||||||||| || ||| Sbjct 563859 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCC 563800 Query 145774 AGTCTCCACCTGCGTCTCCACGAT 145797 |||||| ||| | ||| | ||| Sbjct 563799 AGTCTCTGTCTGGGACTCGATGAT 563776 >seq617 Length=9440908 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 ||||||||||| || | || |||||||| || |||||||| || || ||| || Sbjct 4534515 CGCAGCACTAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCA 4534574 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || |||||||| || ||| |||| | | |||||| || || || || ||||| ||| Sbjct 4534575 TCTTCCAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTG 4534634 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | ||| | || || ||| ||||| || | ||| | | Sbjct 4534635 TCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 4534694 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || ||||| ||||| |||||||| Sbjct 4534695 GTCTTTCCAGTCAGGGTTTTGACGAAGATCTGCAT 4534729 >seq643 Length=9611585 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||||||||| | || | ||| || ||||| || |||||||| || Sbjct 8385125 CCACCTCTCAGACGCAGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 8385066 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| ||| | || | | |||||| || ||||| Sbjct 8385065 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGA 8385006 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | || | ||||| ||| ||| | Sbjct 8385005 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTATCACTGGGCTCAACC 8384946 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || || ||||||||| Sbjct 8384945 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 8384898 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||||||||| | || | ||| || || || || |||||||| || Sbjct 8385353 CCACCTCTCAGACGCAGCACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAG 8385294 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| ||||||||||| ||| | || | | |||||| || ||||| Sbjct 8385293 AGGGTACGACCATCCTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGA 8385234 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | ||| | ||||| ||| ||| | Sbjct 8385233 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCACTGGGCTCAACT 8385174 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || || || |||||||| Sbjct 8385173 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8385127 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||||||||| | || | || |||||||| || |||||||| || Sbjct 8385581 CCACCTCTCAGACGCAGCACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAG 8385522 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || ||||||||||| || |||| | | ||||||||| ||||| Sbjct 8385521 AGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 8385462 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 8385461 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACC 8385402 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || || || || || |||||||| Sbjct 8385401 TCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8385355 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 |||||||| | || | ||| || ||||| || |||||||| ||| || |||||| Sbjct 8386025 CGCAGCACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCA 8385966 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||||||||| || | || | | ||||||||| || || || || || ||| Sbjct 8385965 TCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTG 8385906 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||| | | ||| | |||||| ||| ||| | || | ||| | | Sbjct 8385905 TCCTGGATCTTGGCCTTCACATTCTCGATAGTATCACTGGGCTCAACTTCCAGGGTGATG 8385846 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || || || || || |||||||| Sbjct 8385845 GTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8385811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471922439049600