Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq643 113 4e-20 seq617 100 2e-16 >seq643 Length=9611585 Score = 113 bits (124), Expect = 4e-20 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| ||||| || ||||||||||||| || ||| | || |||| || Sbjct 8386013 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGC 8385954 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| |||| |||| ||| ||||| || | |||||| ||||| || || Sbjct 8385953 TTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTG 8385894 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | ||| || | |||||| ||||| ||||||||| || || | Sbjct 8385893 GC--CTTCACATTCTCGATAGTATCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCAG 8385836 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || |||||||| |||||||| Sbjct 8385835 TCAGGGTCTTGACAAAGATCTGCAT 8385811 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | ||| || | || || ||||| || || || ||||||||||| | Sbjct 8385354 CCCACCTCTCAGACGCAGCACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 8385295 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| | ||||||| || ||||| || |||| |||| ||| || || ||| Sbjct 8385294 GAGGGTACGACCATCCTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGG 8385235 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || ||||| || || || |||||| | | | || || | |||||| Sbjct 8385234 AATGCCTTCCTTGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTATCACTGGGCTCA 8385177 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||| || || ||||| || |||||||| |||||||| Sbjct 8385176 ACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8385127 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | ||| || | ||||| || |||||||| || ||||||||||| | Sbjct 8385582 CCCACCTCTCAGACGCAGCACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGA 8385523 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | || |||| || ||||| ||| | || |||| ||| ||||| ||| Sbjct 8385522 GAGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGAGG 8385463 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || ||||| || || || |||||| | | | ||||| | |||||| Sbjct 8385462 AATGCCTTCCTTGTCCTGGATCTTGGC--CTTCACGTTCTCGATGGTGTCACTGGGCTCA 8385405 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || ||||| || |||||||| |||||||| Sbjct 8385404 ACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8385355 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/234 (68%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | ||| || | || || ||||| ||||| || ||||||||||| | Sbjct 8385126 CCCACCTCTCAGACGCAGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 8385067 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| | || |||| || ||||| || |||| |||| ||| || || ||| Sbjct 8385066 GAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGG 8385007 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || ||||| || || || |||||| | | | || || | |||||| Sbjct 8385006 AATGCCTTCCTTGTCCTGGATCTTGGC--CTTCACATTTTCAATGGTATCACTGGGCTCA 8384949 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | ||||||||| || || ||||| || || ||||| |||||||| ||| Sbjct 8384948 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 8384895 >seq617 Length=9440908 Score = 100 bits (110), Expect = 2e-16 Identities = 167/237 (70%), Gaps = 7/237 (3%) Strand=Plus/Plus Query 16702 CATTTACC-CTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGT 16760 || ||||| | |||| || | ||| || | ||||| ||||||||||| || ||||||| Sbjct 4533813 CAGTTACCACCCCTC--AGGCGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGT 4533870 Query 16761 AGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGT 16820 |||| | || ||| | || |||| || || || ||| | || |||| ||| |||| Sbjct 4533871 AGTCAGACAGGGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGT 4533930 Query 16821 CCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCC 16878 | ||| | |||||| ||||| || || || ||| || | | | ||||| | Sbjct 4533931 CGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACATTTTCAATGGTGTCACT 4533988 Query 16879 GGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||| || | ||||||||| || || ||||| || |||||||| |||||||| Sbjct 4533989 GGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 4534045 Score = 100 bits (110), Expect = 2e-16 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | ||| || | ||||| ||||||||||| || ||||||||||| | Sbjct 4534502 CCCACCTCTGAGGCGCAGCACTAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 4534561 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| || || || || | || |||| ||| || || || Sbjct 4534562 CAGGGTACGACCATCTTCCAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGATCTGGGGG 4534621 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || ||||| || ||||| ||| || | | | ||||| | |||||| Sbjct 4534622 AATGCCTTCCTTGTCCTGGATCTTTGC--CTTGACATTCTCAATGGTGTCACTGGGCTCG 4534679 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | ||||||||| ||||| ||||| |||||||| || ||||||||||| Sbjct 4534680 ACCTCAAGGGTGATGGTCTTTCCAGTCAGGGTTTTGACGAAGATCTGCATTTT 4534732 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| | || | ||| || | ||||| ||||||||||| || ||||||||||||| Sbjct 4534046 CCCTCCCCTCAGGCGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 4534105 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | || |||| || || || ||| | || |||| ||| || || || Sbjct 4534106 CAATGTGCGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGGGG 4534165 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || ||||| || || ||| || || | | | ||||| | |||||| Sbjct 4534166 AATGCCTTCCTTGTCCTGGATCTTGGCT--TTGACATTTTCAATGGTGTCACTGGGCTCA 4534223 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || ||||| || |||||||| |||||||| Sbjct 4534224 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 4534273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405012389691850