Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2 120 4e-22 seq24 114 2e-20 seq41 95.1 2e-14 >seq2 Length=61069995 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 20733743 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 20733684 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 20733683 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 20733624 Query 32803 CAATAAGTCTCTCTCC 32818 ||| | |||||| || Sbjct 20733623 CAACCACTCTCTCACC 20733608 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 20738328 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 20738269 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 20738268 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 20738209 Query 32803 CAATAAGTCTCTCTCC 32818 ||| | |||||| || Sbjct 20738208 CAACCACTCTCTCACC 20738193 Score = 82.4 bits (90), Expect = 1e-10 Identities = 87/113 (77%), Gaps = 4/113 (4%) Strand=Plus/Minus Query 33022 CTTCTGTACAAAATCGTTCTG-CTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33080 |||||||| |||| |||| | | |||||||| || ||||| ||||||||||||||| Sbjct 20728913 CTTCTGTA---AATCTTTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAA 20728857 Query 33081 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 33133 || |||| ||||| ||||| |||||||| |||| | | || || ||||| Sbjct 20728856 AATGCCAGAACATGAGAGATAAAGTATTTTTCATCTGCTTTGAGCTTGTTCCA 20728804 >seq24 Length=20913710 Score = 114 bits (126), Expect = 2e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 12109531 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 12109590 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | |||||||| || || ||||| || ||||||||||| |||||||| || || ||||||| Sbjct 12109591 TCAGCCAAAAAATTGATGCAAACGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 12109650 Query 32803 CAA 32805 ||| Sbjct 12109651 CAA 12109653 >seq41 Length=584612 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 63070 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63129 ||| |||||||| ||||||||||| ||||| || || | || |||||||||| ||| || Sbjct 562703 CACCCGTTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGATCTCTGGCTCTCTG 562644 Query 63130 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 || || || || || ||||| || || || || ||| | | || || |||||||| Sbjct 562643 CTCTTCTTTCCCAGTGTTCTTCTTCAGGTCCAGAAACTCAAAGATGTCCAGGTGCCACGG 562584 Query 63190 TTCCAAGTATATGGCCATAACTCCAGG 63216 |||| ||| ||||| | | | ||||| Sbjct 562583 CTCCAGGTAGATGGCAAAAGCCCCAGG 562557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633510699074000