Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq643 116 3e-21 >seq643 Length=9611585 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | ||||| ||| | | Sbjct 8385583 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 8385642 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| ||||| ||||| ||||| || ||||| Sbjct 8385643 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCAGACCAG 8385702 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||| || || | ||||||| ||| || || || ||||| Sbjct 8385703 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 8385762 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||||||||| || || | ||||| | || ||||| || Sbjct 8385763 ATCCAGAAAGAATCCACCCTCCACCTTGTGCTGCGTCTGAGAGGTGG 8385809 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | ||||| ||| | | Sbjct 8385127 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 8385186 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| ||||| || ||| ||||| ||||| ||||| || || || Sbjct 8385187 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAG 8385246 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | ||||| || ||||| || | || |||| ||| || | || ||||| Sbjct 8385247 CAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAGGATGGTCGTACCCTCTCTGACTACAAC 8385306 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||||||||| || || | ||||| | || ||||| || Sbjct 8385307 ATCCAGAAAGAATCCACCCTCCACCTTGTGCTGCGTCTGAGAGGTGG 8385353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433247118651725