Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq617 104 2e-17 >seq617 Length=9440908 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || |||||||| || |||| ||||| ||||| ||| ||||| || ||||| Sbjct 4534501 ATGCAGATATTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 4534442 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || || || || ||||| |||||| |||| ||| ||| Sbjct 4534441 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCACCCGACCAA 4534382 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| || | ||| || || || |||||||| | || || |||| ||||| Sbjct 4534381 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCCGACTATAAC 4534322 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||||||||| || || | || |||||||| | ||||| Sbjct 4534321 ATCCAGAAAGAATCTACCCTGCACCTTGTCCTGCGTCTGAGAGGTGG 4534275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422961038923000