Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq643 107 2e-18 seq617 107 2e-18 >seq643 Length=9611585 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | || || || || |||| || ||||| || ||| Sbjct 8385126 GATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAG 8385185 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 |||||| | || | | || || || || |||||||| || ||||| |||||||| Sbjct 8385186 TGATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCA 8385245 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || || || ||||| ||| | |||||| || ||| |||| || ||||| Sbjct 8385246 GCAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAGGATGGTCGTACCCTCTCTGACTACAA 8385305 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || |||||||||||| Sbjct 8385306 CATCCAGAAAGAATCCACC 8385324 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | || || || || |||| || ||||| || ||| Sbjct 8385810 GATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAG 8385869 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || | || || || || ||||||||||| ||||| || || || Sbjct 8385870 TGATACTATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 8385929 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||| ||||| ||| | || ||| |||||| | ||||| ||||| Sbjct 8385930 GCAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 8385989 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || || ||||||||| Sbjct 8385990 CATCCAGAAGGAATCCACC 8386008 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || || |||| || ||||| || ||| Sbjct 8385582 GATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAG 8385641 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | | || || || || |||||||| |||||||| || || || Sbjct 8385642 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCAGACCA 8385701 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || |||||||| || ||| | || ||| || ||| | || || ||||| Sbjct 8385702 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAA 8385761 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || |||||||||||| Sbjct 8385762 CATCCAGAAAGAATCCACC 8385780 >seq617 Length=9440908 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | || || || || |||| || ||||| || ||| Sbjct 4534502 GATGCAGATATTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAG 4534443 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| || || ||||||||||| || ||||||||||| || Sbjct 4534442 TGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCACCCGACCA 4534383 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | || || ||||| || || ||| | || ||| || ||| | ||||| || || Sbjct 4534382 ACAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCCGACTATAA 4534323 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || |||||||| ||| Sbjct 4534322 CATCCAGAAAGAATCTACC 4534304 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | || || || || |||| ||||| || || ||| Sbjct 4534046 GATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 4533987 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| || || || ||||||||||| ||||| ||||| || Sbjct 4533986 TGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCA 4533927 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||| || || ||| | || ||| || ||| | || || ||||| Sbjct 4533926 GCAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAA 4533867 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || || || |||||| Sbjct 4533866 CATCCAGAAGGAGTCCACC 4533848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419649657112975