Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq617 199 7e-46 seq643 178 2e-39 >seq617 Length=9440908 Score = 199 bits (220), Expect = 7e-46 Identities = 175/218 (80%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || || || ||||| ||||||||||| ||||| || || | Sbjct 4534284 AGACGCAGGACAAGGTGCAGGGTAGATTCTTTCTGGATGTTATAGTCGGACAGGGTACGA 4534343 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||||||||| || || || || || |||||||||||||||||||||||| Sbjct 4534344 CCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGTTGGTCGGGTGGAATGCCTTCC 4534403 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| |||||||| ||| |||||||| | || ||||||| |||| Sbjct 4534404 TTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTG 4534463 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||||||||| ||||||||||| Sbjct 4534464 ATGGTCTTGCCAGTCAGGGTCTTGACAAATATCTGCAT 4534501 Score = 183 bits (202), Expect = 6e-41 Identities = 172/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || ||||| || |||||||| || |||||||| || || || || || | Sbjct 4534512 AGGCGCAGCACTAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGA 4534571 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||||||||| ||||| || || || || || || || |||||||||||| Sbjct 4534572 CCATCTTCCAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 4534631 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || |||||||||||||| ||| |||||||| | || || || | |||| Sbjct 4534632 TTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTG 4534691 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| ||||| || ||||| |||||||| ||||||||| Sbjct 4534692 ATGGTCTTTCCAGTCAGGGTTTTGACGAAGATCTGCATT 4534730 Score = 163 bits (180), Expect = 5e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | ||| || |||||||| || |||||||| || || || || || | Sbjct 4533828 AGGCGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGA 4533887 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||||||||| || || || || || || |||||||| |||||||| ||| Sbjct 4533888 CCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCCTCC 4533947 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| |||||||| || |||||||| | || || || | |||| Sbjct 4533948 TTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTG 4534007 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||||||||| || |||||||| Sbjct 4534008 ATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 4534045 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | ||||||| || | ||| || |||||||| || |||||||| || ||||| Sbjct 4534047 CCTCCCCTCAGGCGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 4534106 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | |||||||| | ||||||||| || || || || || || || || || ||| Sbjct 4534107 AATGTGCGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 4534166 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| || ||||| || |||||||| | || || Sbjct 4534167 ATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCAACC 4534226 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || ||||||||||| || |||||||| Sbjct 4534227 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 4534273 >seq643 Length=9611585 Score = 178 bits (196), Expect = 2e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || ||||| ||||| |||||||| || || || || || | Sbjct 8385800 AGACGCAGCACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGA 8385741 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||||||||| || || || || || ||||| || ||||| |||||| Sbjct 8385740 CCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCC 8385681 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| ||| |||||||||||| | || ||||||| |||| Sbjct 8385680 TTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACTTCCAGGGTG 8385621 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| ||||| |||||||| Sbjct 8385620 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 8385583 Score = 168 bits (186), Expect = 1e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || ||||| ||||| |||||||| || || ||||| || | Sbjct 8385344 AGACGCAGCACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTACGA 8385285 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | |||||| || ||||| || || || || || ||||| |||||||||||| Sbjct 8385284 CCATCCTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGAATGCCTTCC 8385225 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| ||| ||| ||||| || | || ||||||| |||| Sbjct 8385224 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCACTGGGCTCAACTTCCAGGGTG 8385165 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||||||||| || |||||||| Sbjct 8385164 ATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8385127 Score = 159 bits (176), Expect = 6e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || || ||||| || |||||||| || || ||||| || | Sbjct 8385572 AGACGCAGCACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGA 8385513 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || ||||| || |||||||||||| Sbjct 8385512 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCC 8385453 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| ||| |||||||||||| | || || || | ||| Sbjct 8385452 TTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACCTCGAGAGTG 8385393 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||||||||| || |||||||| Sbjct 8385392 ATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8385355 Score = 159 bits (176), Expect = 6e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | ||| || ||||| || || |||||||| || ||||| || || | Sbjct 8386028 AGGCGCAGCACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGA 8385969 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || ||||| || |||||||| ||| Sbjct 8385968 CCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCC 8385909 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| || |||||| || || | || ||||||| |||| Sbjct 8385908 TTGTCCTGGATCTTGGCCTTCACATTCTCGATAGTATCACTGGGCTCAACTTCCAGGGTG 8385849 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||||||||| || |||||||| Sbjct 8385848 ATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8385811 Score = 145 bits (160), Expect = 1e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || ||||| || || |||||||| || || ||||| || | Sbjct 8385116 AGACGCAGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGA 8385057 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || ||||| || || || || || ||||| |||||||||||| Sbjct 8385056 CCATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGAATGCCTTCC 8384997 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| || || ||||| || | || || || | |||| Sbjct 8384996 TTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTATCACTGGGCTCAACCTCAAGGGTG 8384937 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| || || |||||||| Sbjct 8384936 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 8384899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921445966911800