Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq617 122 7e-23 seq643 98.7 8e-16 >seq617 Length=9440908 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||||||||| || ||||| || ||| || |||||| |||||| || || || ||| Sbjct 4534305 GTAGATTCTTTCTGGATGTTATAGTCGGACAGGGTACGACCATCTTCCAGCTGCTTCCCA 4534364 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||||||||| || ||||||||||| ||||| ||||| || Sbjct 4534365 GCAAAGATCAGCCTCTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTG 4534424 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || |||| ||| | || ||||| ||||| || Sbjct 4534425 ACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 4534484 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 4534485 TTGACAAATATCTGCAT 4534501 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || |||||| |||||| || || || ||| Sbjct 4533849 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTCCCA 4533908 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| ||||||||||| || ||||| ||||| || Sbjct 4533909 GCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 4533968 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| |||||| ||| ||||| || | ||| | || ||||| ||||| || Sbjct 4533969 ACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 4534028 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 4534029 TTGACAAAGATCTGCAT 4534045 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 ||||| || | || || || || || |||||||| || || |||||| |||||| Sbjct 4534521 ACTAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCC 4534580 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || |||||| |||| || | ||| || || || ||||||||||| ||||| Sbjct 4534581 AGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 4534640 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 |||||| || | | |||| |||||| ||| ||||| || | ||| | || || Sbjct 4534641 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTT 4534700 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || ||||| ||||| || || |||||||| Sbjct 4534701 CCAGTCAGGGTTTTGACGAAGATCTGCAT 4534729 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || ||| |||||| || || || ||| Sbjct 4534077 GTGGACTCCTTCTGGATGTTGTAGTCGGACAATGTGCGACCATCTTCCAGCTGCTTCCCA 4534136 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || || ||||||||||| ||||| ||||| ||| Sbjct 4534137 GCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTG 4534196 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| |||||| ||| || || || | ||| | || ||||| ||||| || Sbjct 4534197 ACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 4534256 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 4534257 TTGACAAAGATCTGCAT 4534273 >seq643 Length=9611585 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| || | |||||| ||| || || || || ||| Sbjct 8385323 GTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTACGACCATCCTCCAGCTGCTTGCCA 8385264 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || || | ||| || || |||||||||||||| ||||| ||||| || Sbjct 8385263 GCGAAAATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 8385204 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || ||| || || |||| ||| | || ||||| ||||| || Sbjct 8385203 ACGTTCTCAATGGTATCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 8385144 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 8385143 TTGACAAAGATCTGCAT 8385127 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| || | || ||| |||||| || || || ||| Sbjct 8385095 GTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCTTCCAGCTGCTTGCCA 8385036 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || || | ||| || || |||||||||||||| ||||| ||||| || Sbjct 8385035 GCGAAAATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 8384976 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| ||| || ||| || || || | ||| | || ||||| ||||| || Sbjct 8384975 ACATTTTCAATGGTATCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 8384916 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 8384915 TTCACAAAGATCTGCATG 8384898 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | ||| ||| |||||| || || || ||| Sbjct 8385551 GTTGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCTTCCAGCTGCTTGCCA 8385492 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| |||||||||||||| ||||| ||||| || Sbjct 8385491 GCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 8385432 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || || | || | || ||||| ||||| || Sbjct 8385431 ACGTTCTCGATGGTGTCACTGGGCTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTC 8385372 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 8385371 TTGACAAAGATCTGCAT 8385355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420055981257780