Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq41 176 9e-39 seq13889 140 6e-28 seq2 93.3 8e-14 >seq41 Length=584612 Score = 176 bits (194), Expect = 9e-39 Identities = 183/236 (78%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAG 244377 || |||||||||||| ||| ||||| |||||| |||||| || | ||||||||| Sbjct 566938 CACCCCCTTGCTGACCGGGGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCTGGGCCAG 566879 Query 244378 CTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTC 244437 || |||||| | || ||||| |||||||||||||||||||||| || ||||| | | Sbjct 566878 CTCACAGCTGGCCTCCAGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTCAGG-C 566820 Query 244438 GC-GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCT 244496 || |||||| | || |||||||| | ||| | |||||| |||||||||| |||| Sbjct 566819 GCTGGGCCTCGGGGCTCTCGAAGGGGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCCT 566760 Query 244497 GCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGG-CTTCGGGCAC 244551 ||||||||||||||||||| | ||| ||| |||||||||| || || |||| || Sbjct 566759 GCACGCCGATGCCGATGGGCCGGTGCCGCCGGTTGGAGCGCTCGGCCTGCGGGGAC 566704 Score = 140 bits (154), Expect = 6e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 |||||||||| | ||||||||| || ||||||||||| ||||| ||||||||||||| Sbjct 563923 CCACCTCCTCGTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 563864 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| ||| || ||| ||| |||||||| |||||||||||||||| |||| Sbjct 563863 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 563804 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 || ||||| ||||| ||| || | || |||||| | | ||||| ||| || Sbjct 563803 TGCCAGTCTCTGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 563744 Query 244884 TGCGAGCCTTGCCCTCTGCCTCGTAGC 244910 |||| | ||||| |||||||| Sbjct 563743 TGCGCACGCGGCCCTGCCGCTCGTAGC 563717 Score = 113 bits (124), Expect = 9e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 |||| | ||||||||| || |||||||||||||| ||| || || |||| |||||| Sbjct 562702 ACCCGTTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGATCTCTGGCTCTCTGC 562643 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || || |||||||||||| |||| |||| ||| ||||||| ||| | |||||| ||| Sbjct 562642 TCTTCTTTCCCAGTGTTCTTCTTCAGGTCCAGAAACTCAAAGATGTCCAGGTGCCACGGC 562583 Query 245123 TCCATGTAGA 245132 |||| ||||| Sbjct 562582 TCCAGGTAGA 562573 Score = 111 bits (122), Expect = 3e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155 |||||| ||||| ||||| || || | ||| ||||| ||||||| || |||||||| Sbjct 568919 CACCTGGAACTCCCCCGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGAT 568860 Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215 | ||| |||||||||| ||||| || ||| ||||| |||||||| |||| || || Sbjct 568859 GGACTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCAGTGGGCATGGGGGACAGGAGGAG 568800 Query 244216 ACTGTTCCTCACGCCGTGCCT 244236 ||||||||||| |||| ||| Sbjct 568799 GCTGTTCCTCACACCGTACCT 568779 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAG 243933 || ||||||||||||||||||||||| ||||| | | | || || ||||| | | || Sbjct 570374 GATGTTGAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCCGCAGCCATCTTCAGGAT 570315 Query 243934 GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCC 243993 | ||||| || ||||| || |||||||||||| |||| |||| || |||| | | Sbjct 570314 GGTTTTCTGGGAGATCTCCCACACCGTCTTGTAGAGCTGCTTCAGGTCATCTGGGATCTC 570255 Query 243994 TTCGATGTTCTG 244005 ||||||||| Sbjct 570254 AGGGATGTTCTG 570243 >seq13889 Length=1787 Score = 140 bits (154), Expect = 6e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 |||||||||| | ||||||||| || ||||||||||| ||||| ||||||||||||| Sbjct 830 CCACCTCCTCGTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 771 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| ||| || ||| ||| |||||||| |||||||||||||||| |||| Sbjct 770 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 711 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 || ||||| ||||| ||| || | || |||||| | | ||||| ||| || Sbjct 710 TGCCAGTCTCTGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 651 Query 244884 TGCGAGCCTTGCCCTCTGCCTCGTAGC 244910 |||| | ||||| |||||||| Sbjct 650 TGCGCACGCGGCCCTGCCGCTCGTAGC 624 >seq2 Length=61069995 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| |||| || Sbjct 20733608 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 20733667 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| ||||| || ||||| || ||||| Sbjct 20733668 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTT 20733727 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 20733728 ATTAGCAGAGATGAGG 20733743 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| |||| || Sbjct 20738193 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 20738252 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| ||||| || ||||| || ||||| Sbjct 20738253 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTT 20738312 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 20738313 ATTAGCAGAGATGAGG 20738328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944158418064400