Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq2 84.2 2e-11 >seq2 Length=61069995 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 20534 GCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCT-GTG 20592 || ||||||||||||||||||||||| || || |||||||||||||||||| ||| ||| Sbjct 50377254 GCTCCAAAGTGCCTCCACTGGAAACCATACACTGGTCCCAAATCCCCCTCCTCTCTGGTG 50377195 Query 20593 CGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCC 20652 | | || || |||||||||| | || ||||| ||||| ||||| || || Sbjct 50377194 C-TGAAACCCTGCTTATCCAGGAACTCACGTGACCCATTAGCATCCCAAATCTTCACACC 50377136 Query 20653 TGTTCTTGAAAGCTC 20667 | || || ||||| Sbjct 50377135 TTTTGCAGAGAGCTC 50377121 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || || |||||||| |||| ||| || || | || || ||||||||||| || ||||| Sbjct 50380740 AGCCCTGTAACATGGGCAATCATGTATGTGAGCAGTGAGTAGCTGGCAATATTGAAAGGC 50380681 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGA 20340 ||||| | ||||| ||||| ||||||||||| || || || || Sbjct 50380680 ACTCCTAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGA 50380637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441288304694600