Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq617 122 2e-22 >seq617 Length=9440908 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| |||||||||| || || || || ||||| | || || || || || Sbjct 4534310 TTCTTTCTGGATGTTATAGTCGGACAGGGTACGACCATCTTCCAGCTGCTTCCCAGCAAA 4534369 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| | |||||| ||| || ||||| || || ||||| || || || || || Sbjct 4534370 GATCAGCCTCTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATT 4534429 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || | || ||||| || ||||| ||||| || ||||| |||||||| Sbjct 4534430 CTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGAC 4534489 Query 288462 GAATATCTGCAT 288473 ||||||||||| Sbjct 4534490 AAATATCTGCAT 4534501 Score = 109 bits (120), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || || || || ||||| | || || || |||||| Sbjct 4534539 TCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTCCCAGCGAAG 4534598 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | ||| || ||||||| || ||||| || |||||||| || || || || Sbjct 4534599 ATCAGCCTCTGCTG---ATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACA 4534655 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || | || || || || ||||| ||||| || ||||| || ||| Sbjct 4534656 TTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTTCCAGTCAGGGTTTTG 4534715 Query 288460 ACGAATATCTGCATT 288474 ||||| ||||||||| Sbjct 4534716 ACGAAGATCTGCATT 4534730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179422924158570