Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq643 127 2e-24 seq617 98.7 1e-15 >seq643 Length=9611585 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| || || |||||||| || | || |||||| | ||| Sbjct 8385110 AGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCT 8385051 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || |||| |||| |||||| ||||||||||| ||||| || || Sbjct 8385050 TCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCC 8384991 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | ||||||| || || || || | || | |||| Sbjct 8384990 TGGATCTTGGCCTTCACATTTTCAATGGTATCACTGGGCTCAACCTCAAGGGTGATGGTC 8384931 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| |||| || || || || || ||||| || Sbjct 8384930 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 8384896 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || |||||||| || |||||||| || | || ||| || | || Sbjct 8385338 AGCACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTACGACCATCC 8385279 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || |||| |||| |||||| ||||||||||| ||||| || || Sbjct 8385278 TCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCC 8385219 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | ||||||| || || ||||| | || | |||| Sbjct 8385218 TGGATCTTGGCCTTCACGTTCTCAATGGTATCACTGGGCTCAACTTCCAGGGTGATGGTC 8385159 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || || || || ||||| Sbjct 8385158 TTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8385127 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| || || |||||||| || | | |||||| | ||| Sbjct 8386022 AGCACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCT 8385963 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| |||| |||| ||||||||| || ||||| || || || || Sbjct 8385962 TCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 8385903 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | ||||||| || || ||||| | || | |||| Sbjct 8385902 TGGATCTTGGCCTTCACATTCTCGATAGTATCACTGGGCTCAACTTCCAGGGTGATGGTC 8385843 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || || || || ||||| Sbjct 8385842 TTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8385811 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | || ||||| | ||| Sbjct 8385566 AGCACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCT 8385507 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| ||||||||| |||||||| ||||| || || Sbjct 8385506 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTCC 8385447 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || |||| || || || || | ||| | |||| Sbjct 8385446 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACCTCGAGAGTGATGGTC 8385387 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || || || || ||||| Sbjct 8385386 TTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8385355 >seq617 Length=9440908 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||| || | ||||| |||||||| || Sbjct 4533849 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTCCCA 4533908 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| |||||||||||||||||| || || || || || || || ||| Sbjct 4533909 GCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 4533968 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || || || || | || | ||||||||| |||| || Sbjct 4533969 ACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 4534028 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 4534029 TTGACAAAGATCTGCAT 4534045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499549149248600