Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq13889 95.1 1e-14 seq41 95.1 1e-14 seq643 89.7 5e-13 seq617 84.2 2e-11 >seq13889 Length=1787 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| ||||||||||| ||| ||||||||||| || ||| ||||| || ||||| | Sbjct 812 TGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 753 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751 |||| || | ||||| | ||| ||| |||||||||| || ||| ||||| Sbjct 752 TGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTC 701 >seq41 Length=584612 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| ||||||||||| ||| ||||||||||| || ||| ||||| || ||||| | Sbjct 563905 TGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 563846 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751 |||| || | ||||| | ||| ||| |||||||||| || ||| ||||| Sbjct 563845 TGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTC 563794 >seq643 Length=9611585 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||||| || | || | |||||||||| || ||||||||||| Sbjct 8385581 CCACCTCTCAGACGCAGCACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAG 8385522 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || || || || || | | |||| || | ||| ||||| ||||| Sbjct 8385521 AGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 8385462 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | |||||| | | ||| ||| Sbjct 8385461 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACC 8385402 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || |||||||| || || ||||| |||||||| Sbjct 8385401 TCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8385355 >seq617 Length=9440908 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || ||||| || || || || || || | | Sbjct 4533852 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTCCCAGCA 4533911 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| ||||| || || || ||||| ||| || || | Sbjct 4533912 AAGATCAGCCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACA 4533971 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | |||||| | | ||| ||||| | || | || || |||||||| || || Sbjct 4533972 TTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTG 4534031 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 4534032 ACAAAGATCTGCAT 4534045 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || || || || || || || | | Sbjct 4534080 GACTCCTTCTGGATGTTGTAGTCGGACAATGTGCGACCATCTTCCAGCTGCTTCCCAGCA 4534139 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| || || || || || ||||| ||||| ||| || ||| | Sbjct 4534140 AAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTGACA 4534199 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | |||||| | | ||| ||||| | || | || || |||||||| || || Sbjct 4534200 TTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTG 4534259 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 4534260 ACAAAGATCTGCAT 4534273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496167396766800