Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq643 87.8 1e-12 seq617 87.8 1e-12 >seq643 Length=9611585 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || |||||||| || ||| | | | ||||| | || Sbjct 8385101 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCTTCCAGCTGC 8385042 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||||||| | |||| | ||| || ||| ||||| ||||||||||| || ||| Sbjct 8385041 TTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTG 8384982 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| |||| || ||||| || || || || | ||| ||||| || || ||| Sbjct 8384981 GCCTTCACATTTTCAATGGTATCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTC 8384922 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 || || || ||||| || ||||| || Sbjct 8384921 AGGGTCTTCACAAAGATCTGCATGTT 8384896 >seq617 Length=9440908 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || |||||||| ||||| || ||||| || ||| || | | | ||||| | || Sbjct 4534299 TGCAGGGTAGATTCTTTCTGGATGTTATAGTCGGACAGGGTACGACCATCTTCCAGCTGC 4534358 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||| | |||||||||| |||||| ||||||||||| || ||| Sbjct 4534359 TTCCCAGCAAAGATCAGCCTCTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGGATCTTG 4534418 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || || || || || || || | ||| ||||| || || ||| Sbjct 4534419 GCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTC 4534478 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || ||||| Sbjct 4534479 AGGGTCTTGACAAATATCTGCAT 4534501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357325292224775