Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq835 165 1e-35 seq495 109 8e-19 >seq835 Length=3194076 Score = 165 bits (182), Expect = 1e-35 Identities = 214/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| ||||| |||||| || ||||| || | || || | Sbjct 1702819 GGAAGGCAGTGAAGGGACAGCCCTTGACATTGTTGCAGATGAGCTTTTGCAAGGAGGCAG 1702878 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | |||||| || || || | || |||||||||||||| ||||||||| | |||| Sbjct 1702879 TGTTGATGATGTCAAAGCCCACTTTGCCACCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 1702938 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| | || |||| || || |||| ||| ||||| || |||| ||| | ||| Sbjct 1702939 AGCAGATGGCATTGCCCATCAGTCCCTTCAGGGAGAACGGGGCTCCCATCTCCACCATGG 1702998 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | || |||||||||||||| || || || ||||| || | | ||| | ||| || || | Sbjct 1702999 TTTCTCCGAAGATGGCACCTGGGCGTGGCTTTTCCACCAGAAGGCCTGGGTACAGCTCCA 1703058 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || || | ||| ||||| || | |||| ||| || || || ||||| || ||| Sbjct 1703059 TGGCATCAATGTCTCCATACAGCTCCTCCAGCTCAGCTGCCATTTCCTTTTCTCCT 1703114 Score = 159 bits (176), Expect = 5e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 |||||||| || | ||||||||| |||| || ||||| || || |||| || |||||| Sbjct 1704773 GTGGTTTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGCTCCCGTCTGAGGACGTCGCAG 1704832 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 || | |||||| || | |||||| || |||||||||||||| | || ||||| | || Sbjct 1704833 ACGCGGTTGTGCTCCCGCAGCCAGATCGTGGCGTACATCATCAGGCCTGGCACCAGCCCG 1704892 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 ||||| || | |||||| | || ||||| | || ||||| | ||| | |||||||| Sbjct 1704893 AACACCTCCTGCCCCACCGAGAACCGCAGGTGCTCCGGCACGTGGGGGGGGTACAGCATC 1704952 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | ||||||| || || || || ||||| |||||||| || ||||| | ||| Sbjct 1704953 TCTGCCTGGGTGTCCTTCACCGTTGGGGGGTACATTTCTCCATCAATCATCTG 1705005 Score = 105 bits (116), Expect = 1e-17 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 9478 CCGTGCTTGATGAGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCG 9537 ||||||| | | |||||| |||||||| | ||| || | | || |||| | ||| Sbjct 1703613 CCGTGCTCCAGCATGATGGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCA 1703672 Query 9538 CCTATGCGAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCC 9597 ||| | || || |||| ||| | |||||| |||| ||||| ||||||||||| Sbjct 1703673 TGGATGTGGAAGGTGTCGGGCAGCAGCGGGTGCCAGTGGTACAGGGTGTTGAACTCGGCT 1703732 Query 9598 GCTATTCGGTTCTGGTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTA 9655 || || |||||||||||||| || | ||| |||||| | ||| ||||| || | | Sbjct 1703733 GCGATCCGGTTCTGGTACTGGAACCGCTGGT--TGAACAGCAGCTCGGGGTCGAACTTCA 1703790 Query 9656 GCTGGAAGTGGTACCCGCTGAGTTGCTGGACATA 9689 ||| |||||||||||| || | ||||| || || Sbjct 1703791 GCTTGAAGTGGTACCCACTCAAGTGCTGCACGTA 1703824 Score = 96.9 bits (106), Expect = 5e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 10865 TAAAACCCCGTCCGCGTACAATCGCACCAATAACGATCAAACCCCACCGTCATGCATACC 10924 || || ||||||| ||| || |||||| || ||||| |||| ||||||||| ||| Sbjct 1707466 TAGAAGCCCGTCCTCGTGCAGTCGCACTGGTAGCGATCCGGCCCCGTCGTCATGCAGACC 1707525 Query 10925 CCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTTGGCTGCAA 10967 |||| |||||||| ||||| || ||||||||||||||||||| Sbjct 1707526 CCTCTGTTCTGGCAGGGGTGGGAGCAGCAAGGGTTGGCTGCAA 1707568 >seq495 Length=12029152 Score = 109 bits (120), Expect = 8e-19 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || ||||| || || || || | | || || || || ||||||||||||||| | Sbjct 1728639 GCCGTCTTCACTATCTCAAAGCCAGTGGCTCCACCAAATGTACTGGGTTTCCAGTACTCT 1728698 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| || | | ||||| |||| |||||| ||||| || | ||| | Sbjct 1728699 GGGGAGCAGATGGGATTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCAATCTCCACC 1728758 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||||| || || || ||| || ||| | ||||| |||| | ||||| | || | Sbjct 1728759 ATGCTTTCCCCAAAAATGCCATTGGGTTGGGGTTTCTCGAGCAGCAAGCCTGGATAAAAC 1728818 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | ||| || | ||| || || || |||||| ||| ||||| |||| | ||| ||| Sbjct 1728819 TCCAGAGCATCAATGTCTCCGTACAGCTCTTCCAGCTCCGCAGCCTTCTCTTCCTCTCCT 1728878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723589451321000