Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq41 109 9e-19 >seq41 Length=584612 Score = 109 bits (120), Expect = 9e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976 ||| ||||| | ||||||| | ||| || | |||||| ||||| ||||| ||||| Sbjct 570428 CCAGCCGTAGAAGTGCATGCTGGTCAGCTTCCCGTAGTTGGGCTCGGCGATGTGGATGTT 570369 Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGTCTT 204036 || |||||||| ||||||||||| | | | | || || ||||| || | ||||| || Sbjct 570368 GAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCCGCAGCCATCTTCAGGATGGTTTT 570309 Query 204037 CTGCGAAATCTCCCACACCGTCTTG 204061 ||| || |||||||||||||||||| Sbjct 570308 CTGGGAGATCTCCCACACCGTCTTG 570284 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || || || || || |||| |||||| | | |||| ||||| | || |||| | Sbjct 568916 CTGGAACTCCCCCGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGATGGA 568857 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||||||||| | ||||| || ||| ||| ||||||||||| | |||||| ||| Sbjct 568856 CTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCAGTGGGCATGGGGGACAGGAGGAGGCT 568797 Query 204316 GTTGCGCACACCGTA 204330 ||| | ||||||||| Sbjct 568796 GTTCCTCACACCGTA 568782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795002977476400