Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq643 140 3e-28 seq617 138 1e-27 seq2 84.2 2e-11 >seq643 Length=9611585 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || || ||||| ||||||||| | || || ||| || Sbjct 8384896 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 8384955 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | | ||| | || | || |||| ||||| || || ||||| |||| Sbjct 8384956 AGTGATACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGAT 8385015 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| |||| ||| ||||| |||||||| || | ||||||||| |||||| Sbjct 8385016 CAGCAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGACTAC 8385075 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| |||||| | || || || | ||||||||| ||||||| || Sbjct 8385076 AACATCCAGAAGGAATCCACCCTCCACCTTGTGCTGCGTCTGAGAGGTGG 8385125 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 8385127 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 8385186 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | || |||| ||||| || || ||||| |||| || Sbjct 8385187 GATACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCA 8385245 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| |||| ||| ||||| |||||||| || | || |||||| |||||||| Sbjct 8385246 GCAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAGGATGGTCGTACCCTCTCTGACTACAA 8385305 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || ||| | || || || | ||||||||| ||||||| || Sbjct 8385306 CATCCAGAAAGAATCCACCCTCCACCTTGTGCTGCGTCTGAGAGGTGG 8385353 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| |||||||| |||| || ||| ||| Sbjct 8385355 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTTGAGCCCAGT 8385414 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || ||||| | ||||| Sbjct 8385415 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCA 8385473 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||| ||| |||||||| Sbjct 8385474 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTCTCTGACTACAA 8385533 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| | ||||||||| ||||||| || Sbjct 8385534 CATCCAGAAGGAGTCAACTCTGCACCTTGTGCTGCGTCTGAGAGGTGG 8385581 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 8385583 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 8385642 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || |||||| | ||||| Sbjct 8385643 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCAGACCA 8385701 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || || |||||||| || | || ||||| |||||||| Sbjct 8385702 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAA 8385761 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || ||| | || || || | ||||||||| ||||||| || Sbjct 8385762 CATCCAGAAAGAATCCACCCTCCACCTTGTGCTGCGTCTGAGAGGTGG 8385809 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 8385811 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 8385870 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | || |||| ||||| ||||| |||||| | ||||| Sbjct 8385871 GATACTATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 8385930 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| |||| || ||||| |||||||| || | |||||||| |||||||||| Sbjct 8385931 CAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 8385990 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| |||||| | || || || | |||||||| | || || ||| Sbjct 8385991 ATCCAGAAGGAATCCACCCTCCACCTCGTGCTGCGCCTCAGGGGGGGC 8386038 >seq617 Length=9440908 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || ||||| ||||| || || || || ||||||||| | || |||||| | Sbjct 4534733 AAAAATGCAGATCTTCGTCAAAACCCTGACTGGAAAGACCATCACCCTTGAGGTCGAGCC 4534674 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || |||| | | | | | || | ||| |||| ||||| || || |||||| | || Sbjct 4534673 CAGTGACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAGA 4534614 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||| |||| || | ||| || || |||||||| || | || ||||| ||||| Sbjct 4534613 TCAGCAGAGGCTGATCTTCGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTA 4534554 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| | || ||||| || |||||||| | ||||| || Sbjct 4534553 CAACATCCAGAAGGAGTCCACTCTGCACTTAGTGCTGCGCCTCAGAGGTGG 4534503 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 4534501 ATGCAGATATTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 4534442 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || ||||| |||||||| Sbjct 4534441 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCACCCGACCAA 4534382 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || |||||||| || | || ||||| |||||| ||| Sbjct 4534381 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCCGACTATAAC 4534322 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| | || ||||| | || |||||| ||||||| || Sbjct 4534321 ATCCAGAAAGAATCTACCCTGCACCTTGTCCTGCGTCTGAGAGGTGG 4534275 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || |||||| ||| Sbjct 4534045 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 4533986 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || |||| ||||| ||||| ||||| ||||||| Sbjct 4533985 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAG 4533926 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || |||||||| || | || ||||| ||||||||| Sbjct 4533925 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 4533866 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || ||||| | || ||||| |||| || || Sbjct 4533865 ATCCAGAAGGAGTCCACCCTGCACCTTGTCCTGCGCCTGAGGGGTGG 4533819 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 4534273 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 4534214 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | |||| || |||| ||||| || || |||||| | || || Sbjct 4534213 GACACCATTGAAAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 4534154 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || |||||||| || | ||||| | |||||||||| Sbjct 4534153 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGCACATTGTCCGACTACAAC 4534094 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || ||||| | || ||||| |||| || || Sbjct 4534093 ATCCAGAAGGAGTCCACCCTGCACCTTGTCCTGCGCCTGAGGGGAGG 4534047 >seq2 Length=61069995 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||| ||||| ||| |||||||| || ||||| ||||| | || | Sbjct 20733743 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 20733684 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||||||||| || || || ||||||||||||| ||| || || || || || | Sbjct 20733683 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 20733624 Query 133037 CCACCA 133042 | |||| Sbjct 20733623 CAACCA 20733618 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||| ||||| ||| |||||||| || ||||| ||||| | || | Sbjct 20738328 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 20738269 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||||||||| || || || ||||||||||||| ||| || || || || || | Sbjct 20738268 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 20738209 Query 133037 CCACCA 133042 | |||| Sbjct 20738208 CAACCA 20738203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500077048169600