Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq617 158 3e-33 seq643 132 1e-25 >seq617 Length=9440908 Score = 158 bits (174), Expect = 3e-33 Identities = 172/227 (76%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || | ||| ||||||||||| || || || ||||| || | || || Sbjct 4534508 TCTGAGGCGCAGCACTAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 4534567 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || |||||||| || | || || ||||| |||||||| Sbjct 4534568 ACGACCATCTTCCAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCC 4534627 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| ||||| || || ||| |||||| |||||||||||||| ||| || || || Sbjct 4534628 TTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCGACCTC 4534684 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 |||||| | |||||||| |||| ||||| ||||| | ||||||| Sbjct 4534685 AAGGGTGATGGTCTTTCCAGTCAGGGTTTTGACGAAGATCTGCATTT 4534731 Score = 136 bits (150), Expect = 9e-27 Identities = 166/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || |||||||| || || || ||||| || || || || |||| || || Sbjct 4534280 TCTCAGACGCAGGACAAGGTGCAGGGTAGATTCTTTCTGGATGTTATAGTCGGACAGGGT 4534339 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || ||||| || | |||||||| || |||||||| Sbjct 4534340 ACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGTTGGTCGGGTGGAATGCC 4534399 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| |||||||| || || |||||| |||||||||||||| ||| || ||||| Sbjct 4534400 TTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACTTC 4534456 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| || || || || | ||||| Sbjct 4534457 CAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAATATCTGCAT 4534501 Score = 127 bits (140), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || || || ||||| || | || || | |||||||| Sbjct 4533837 ACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCC 4533896 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| ||||||||||| || ||||| || Sbjct 4533897 AGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGG 4533956 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| || ||||||||||| ||| || || |||||||| | ||| Sbjct 4533957 ATCTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCGACCTCAAGGGTGATGGTC 4534013 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 4534014 TTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 4534045 Score = 122 bits (134), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || || || ||||| |||| | || | |||||||| Sbjct 4534065 ACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAATGTGCGACCATCTTCC 4534124 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || ||||| ||||||||||| ||||| || Sbjct 4534125 AGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 4534184 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||||| || ||||||||||| ||| || || |||||||| | ||| Sbjct 4534185 ATCTTGGCTTTGACATTTTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTC 4534241 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 4534242 TTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 4534273 >seq643 Length=9611585 Score = 132 bits (146), Expect = 1e-25 Identities = 165/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || |||||||| ||||| ||||| || || || ||||| || | ||||| Sbjct 8385576 TCTCAGACGCAGCACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGAGT 8385517 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || ||||| || | || ||||||||||||||||| Sbjct 8385516 GCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCC 8385457 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| ||||| || || || ||| |||||||| |||||||| ||| || || || Sbjct 8385456 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCAACCTC 8385400 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || |||| || || || || | ||||| Sbjct 8385399 GAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8385355 Score = 123 bits (136), Expect = 6e-23 Identities = 163/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || |||||||| || ||||| ||||| || || ||||| || | || || Sbjct 8385348 TCTCAGACGCAGCACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGT 8385289 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || |||||||| || ||||| || || | || || || ||||||||||| Sbjct 8385288 ACGACCATCCTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGAATGCC 8385229 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| ||||| || || || ||| |||||||||||||| || ||| || ||||| Sbjct 8385228 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATC---ACTGGGCTCAACTTC 8385172 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| || || || || | ||||| Sbjct 8385171 CAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8385127 Score = 114 bits (126), Expect = 3e-20 Identities = 161/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || |||||||| || ||||| || || || || ||||| || | || || Sbjct 8385120 TCTCAGACGCAGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGT 8385061 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || ||||| || || | || || || ||||||||||| Sbjct 8385060 GCGACCATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGAATGCC 8385001 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| ||||| || || || ||| || || |||||||| || ||| || || || Sbjct 8385000 TTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTATC---ACTGGGCTCAACCTC 8384944 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| | ||||| || |||| || || || || | ||||| Sbjct 8384943 AAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 8384899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109263893706605