Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq643 116 2e-21 seq617 109 4e-19 >seq643 Length=9611585 Score = 116 bits (128), Expect = 2e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || ||| | || |||| |||||||| || |||||||| Sbjct 8385774 TTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTCCCGGCAAA 8385715 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||||||| | || | || |||||||| ||||| || ||| Sbjct 8385714 GATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 8385655 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| || |||||| || | ||| ||||| || || || || |||||||| Sbjct 8385654 CTCGATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 8385595 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 8385594 GAAGATCTGCAT 8385583 Score = 111 bits (122), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 8386002 TTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAA 8385943 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||||||| | || | ||||||||||| ||||| || || | Sbjct 8385942 AATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC--A 8385885 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || |||||| || | ||| ||||| || || || || ||||| Sbjct 8385884 TTCTCGATAGTATCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTG 8385825 Query 34968 ACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 8385824 ACAAAGATCTGCAT 8385811 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || |||| |||||||| || || ||||| Sbjct 8385545 TCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAG 8385486 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | || |||||||| ||||| || ||| Sbjct 8385485 ATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTC 8385426 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || |||||| |||| || ||||| || || || || ||||| ||| Sbjct 8385425 TCGATGGTGTCACTGGGCTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACA 8385366 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 8385365 AAGATCTGCAT 8385355 Score = 100 bits (110), Expect = 2e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| |||||||| || || || || Sbjct 8385090 TTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAA 8385031 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||| || | || | || |||||||| ||||| || || Sbjct 8385030 AATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 8384971 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | |||| || |||||| || | ||| ||||| || || || || |||||||| Sbjct 8384970 TTCAATGGTATCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 8384911 Query 34970 AAAGATCTGCATATT 34984 |||||||||||| || Sbjct 8384910 AAAGATCTGCATGTT 8384896 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || ||| | || |||| |||||||| || || || || Sbjct 8385318 TTCTTTCTGGATGTTGTAGTCAGAGAGGGTACGACCATCCTCCAGCTGCTTGCCAGCGAA 8385259 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||| || | || | || |||||||| ||||| || ||| Sbjct 8385258 AATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 8385199 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| || |||||| || | ||| ||||| || || || || ||||| || Sbjct 8385198 CTCAATGGTATCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGAC 8385139 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 8385138 AAAGATCTGCAT 8385127 >seq617 Length=9440908 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 || || ||||||| | || || | ||| | ||| || ||||| ||||| ||||| Sbjct 4533816 TTACCACCCCTCAGGCGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCA 4533875 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 || ||| | || |||| |||||||| || || ||||| || || | |||||||| | Sbjct 4533876 GACAGGGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGA 4533935 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCA 34931 || | ||||||||||| ||||| ||||| | | || | |||| || ||| Sbjct 4533936 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCG 4533995 Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||| ||||| || || || || ||||| |||||||||||||| Sbjct 4533996 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 4534045 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | || || | ||| | ||| || ||||| ||||| ||||| || Sbjct 4534047 CCTCCCCTCAGGCGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 4534106 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | || |||| |||||||| || || ||||| || || | ||||| ||| | || Sbjct 4534107 AATGTGCGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 4534166 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| |||||| | | || | |||| || |||||| Sbjct 4534167 ATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCAACC 4534226 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || || || || ||||| |||||||||||||| Sbjct 4534227 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 4534273 Score = 105 bits (116), Expect = 4e-18 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||||||||| || ||| | || |||| |||||||| || || ||||| Sbjct 4534310 TTCTTTCTGGATGTTATAGTCGGACAGGGTACGACCATCTTCCAGCTGCTTCCCAGCAAA 4534369 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | || ||||| | || | || |||||||| ||||| ||||| | Sbjct 4534370 GATCAGCCTCTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGAC--A 4534427 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || |||||| || | ||| ||||| || || || || ||||| Sbjct 4534428 TTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTG 4534487 Query 34968 ACAAAGATCTGCAT 34981 ||||| |||||||| Sbjct 4534488 ACAAATATCTGCAT 4534501 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 || ||||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 4534521 ACTAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCC 4534580 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || | ||||| ||| | || | || |||||||| Sbjct 4534581 AGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 4534640 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 4534641 ATCTTTGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCT 4534698 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||| || || || || || ||||||||||| || Sbjct 4534699 TTCCAGTCAGGGTTTTGACGAAGATCTGCATTTT 4534732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324573006631320